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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0039600.1

GTTGATTCCATCTTGATGTGATCCTAAAACATGAGAATTTTAACCATTGATCTTTTGAACACAAAATGAAGGCCAAGCAATCGACATTCCTTCATAATGGGCATCACCAATTGTCTTGCAGTGCTTTAGTGGCCTTACGAGCTCTTCATCTTCCTTAAGTGGATGATTGACAACCACTTTAGTGAACTCGTTACCAATCTCAACACCATCCACTTTGTCTCTTGGGTTACTACTCAAATAAGTAGCATATGCCACAGTTTCTTTGTTAGGATATTTTGCAGTCACCAAGATTATTGTGGTACCAACCTTCACTGAAGAAGAATGCACCCTATTTTGGGCCATGTGATGTGCAGTCTTCTTCTGAGTGTCCTGTTTTTCTGTAGTCTTTGCAAATTTCTCTAAATTTCGGTGCTTCTTTTTATTCATCTCCCACCGAAGATCATGAGCAAGGTGTGGCTGTGATGATGAATCATCTTGACATGGTGATCCTATGTTGTTATCAGCCTCCTGGTGCTTTTTGCCACAAAGATCCAGAATATTGTCATGGTGCATATTTTGCTGTTCCTCACATCTTCTTTTGTTCATTGATATATTTATTTGATTACTCATTGAGTCGTCTTGATCAGGTCTACTGCATCGAACCCTCTTTCTATTAGTCCGTACTACTCCCTCTTCAATACCATCATCAAAAGTTCTCTGAGATGTTGCCATAGTTGGTTCACTATTCCCATTGCTTGTTCCTTTGTTTTCCAACTCCTCAATACGCTGACCCAGTGTTTTGACTAATTTTTTTAATTCCCCCACTTCCCCTCTAACATGTGTCTCTTCATCCGATGATGAGTCATTCACTGTAGTGATGTTTATGTTCTTGAGATGATGTGATGTACGACCATAAACCTGCTTAGGAACAGGAAGTAATCCCATTCCGTGCACTTGGCCAGGTTTTTCTTTGCCCAATACTTTATTTAGCGCATCACCTTCCCATGCAACTCTTCCTTGATCATTTTGTGCCAACTCTGGTTGTTCATCGATGAGGTTCTCCAATGTGACCACGTGTTGATTTTTATCTTTATCCTTTTTTTGTGAGTTGCTAAGTAAACCATTGCTCTATGTGGCTGCTTCTTATTTGGATCATCTTGTCTCAAGTCCTCAGACCAACGAGCATAACTCTTTGTCCCTGCTGAGTGAGGGTTCTGTAACATTGAACGACTTCTTTTGTTCTTTGCAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.985748
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0039600.1 osa-miR5820 Translation 3.5 12.824 1 21
Osa01LNT0039600.1 osa-miR164a Cleavage 4.5 18.537 1 21
Osa01LNT0039600.1 osa-miR164b Cleavage 4.5 18.537 1 21
Osa01LNT0039600.1 osa-miR164f Cleavage 4.5 18.537 1 21
Osa01LNT0039600.1 osa-miR437 Cleavage 4.0 10.126 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0039600.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0039600.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0039600.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0039600.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0039600.1 1 gpy1 Others Others RG541 RG101
Osa01LNT0039600.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0039600.1 1 qCC-1 Physiological trait Source activity RG541 RG101
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus