>Osa09LNT0428500.1

TGATGAGGAAGCCAACCTATATCACTTTATTATTTAAGATGTTACCTTACAACCGCAATGATAACTAGTATAAATTAGTGTTTTGCCGGTATTTAGTCATCAGATTCACCCCCTCTATAAATTGCACAAAAGAAAAAAAGAAAAAAACTTAAGAGGGCAAAAAATTACATAATTACATTTACATGGACCAGAACATCTTCCAAGATGTATCCGTGCTAAACGTGAGCCTGATATTAAAAAAAAAAGAATAGCAAGAAAGTCACTAATATATAAACTACAGTAAGCCTAAACGCAACAAAACCTACTCCCAGAGCTTTTCTTGATCGGTTCCCACTTATTTGACTGTTGCTTGAAGACATCCCCTCAACTATCTCCTTGGCCAGCTCTGTTTAAAATGCTTTTTTCTAGGTATACCTTCAGCTTTCACGCAAGACATCCACGAATTTTTCAGTCAGCTAGCAAAAGAATTAGTTTCGTCATCTGAGACTGCTGGGCCGCTCATATACTTCAATAGAACTCCAGGCCACAGGTGGGCAGCAAAGCAAGGTAGAATAACATGCTTTCCACCACAGCTTGACTTAGTTGAAGAAATATGGGGATCCCAGGACATCCGTGAGATCAAAATCTCCCCTCTCTGGCAATGGAGGAAATTTTAATTCAGGGAAAGATTTCTCAAAGCTCTCCAACAAATTTTCGAGGATAGGCGTATCATAGAGTTCCACAAACTTCTCTCGTAGTATTTTGTTCATTGTATCAACATCACAAGCATGTGTCCAATACGAATCATGCACTCCTGCAAAATTTAGTCCTTGCCTTTTGCAAGCAACAGCGGTCATCATCATATGAGAACCGTCAAGGGAGTGCACGAAATTTGGAGGAAAAGCAGTCCTCTGCCGCTTCACCATAACCTTATCTGTTTCACGTTGAAGAGTCAGGACTTGTAATGATGTTTTAATAAGATGCCTCCCAAGCTTGCGATATGGTTGAACAACTGGGAGTCCAAGAGGGGTTGTCCATCTCACAGGTTCATTTTCACAAGCAATTACCTTGGCACAGTCACCAAGCCAGTTCATAATGCTGCGGGCAGCTTGGAACATCTCACCAAGTGCTGTCAGAGTAACCTTAGCAGCATAGCATGATGCACTAAAAAGTTCTGAATCATCACAAATCATGTCTCTCTCCTTTAATCTTCTTTTTATTTGCTCACGTGCTCCAACATAAGTGACACCATACACAGATGTCATCACAGTTTGCTTTACCAATTTCCTGTCAACCTGATCAAGTAGCAGACGTGCGCGTGCTGCATCAGGATCTGTAGCAGGATCTTTTAGCGCATCGTTCTTCATAATTTCCACCACCCTGGTAGCTATTCCAGTATAAACATCTGCAGGCTTCTCCCCGGCAACTAAGTTCACAGCAATGGCTCCCAACTTATCCCTTCCAAGAGCAGCATAGTGCTGCAGGCCATTACAAGAACCATCCTGATGCACAGGAATATGTGAGATCATCGTTTCTGGTGAGGGGCTTCTTAAAGCTTCAGTGAGATTTATGCACACTGCAAGGCATTGGAATGGATCCTCAGCTCCAAGCCACCATCGTTTGCCTTCAAGAGGTCTATCAGCTGAGTCAAATATGTCCTCCAAGTGATTCTCCGTGAATGCAATTCGGCCATCATACGATAACTTGTCAACACCACCAGCATATAAATTTGCTAGATGTATCTTTAGCCAGCGCAAGCCTGATTTACCAAGCGGACGACCTTCTGCAAACTCCAAAACTCCACGGCAAAGATCTGAACCCAAGTGGTTCAGGTAAGGATGCATTGGATAAGCACGGCCTCTAAAATCAAGGTTGTGTGGATAGTAGAAACCATCTTCATCCTTCATTTTGCGAGCTACGGCAAGTTTTAGTTCTACATCACATCTCTGGGAGTGCCTTTCACTATTTTCCTTCTTGGCTGCTCTCAAGGTCCATCTCCATTTCTTCAACTTGTCTTCATCTTCTGTGTCAGGCTTCTCTGGTAAAGCAACATCAGTGCGATCGACCAAGTCAGCAAGCCGGCCACCACTTGACCATATTCTGTCGACAATACTAAGAACTCTTTTGTTAACCCTCCACTTGGTGCTCCCAAGAGTATTTAAGGCCTCAAACACAGATTGCATTTGTTCCCTTGGAGCTCTTCTGACAGCATCTCTCTGTTGTCTAGCTCCATGGGTGCGCATCACAT

Explanation	CPC Score
noncoding	-1.24425

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0428500.1	9	3456090	T	A
Osa09LNT0428500.1	9	3457346	G	C
Osa09LNT0428500.1	9	3457559	T	C
Osa09LNT0428500.1	9	3458195	A	C
Osa09LNT0428500.1	9	3458365	G	A
Osa09LNT0428500.1	9	3459703	A	G
Osa09LNT0428500.1	9	3459768	G	A
Osa09LNT0428500.1	9	3460182	C	G
Osa09LNT0428500.1	9	3461262	T	C
Osa09LNT0428500.1	9	3461669	A	G
Osa09LNT0428500.1	9	3463002	C	T
Osa09LNT0428500.1	9	3464526	A	G
Osa09LNT0428500.1	9	3464558	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0428500.1	osa-miR6251	Translation	4.5	15.432	1	21
Osa09LNT0428500.1	osa-miR396c-3p	Cleavage	4.5	10.631	1	21
Osa09LNT0428500.1	osa-miR168b	Translation	5.0	13.917	1	21
Osa09LNT0428500.1	osa-miR444d.3	Cleavage	4.0	7.286	1	21
Osa09LNT0428500.1	osa-miR2876-5p	Cleavage	4.5	19.861	1	21
Osa09LNT0428500.1	osa-miR3981-5p	Cleavage	5.0	17.29	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0428500.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0428500.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0428500.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0428500.1	9	nan	Morphological trait	Root	C711	G103

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus