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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa09LNT0428600.1

GCCAGGACAAAAGCTAGCATACAAACCTTGCCCAGTTTCATTTTACAAGGAAGAATTATAATGTTTACAGCTGCCACACAAAAGCTGACTATCCTTACAAACATACAGGCGCGTGGCAAAGTTTCAACACAAATTGTAGATCCTCGGAAAACTTCGTTCAGCTCTTTGCACCGTGTATGATCGCCCGGACAAAGTCTTCACATGTAGTGTGGCCACCGGAGAACACATCTGGCAACGCACCCATGACATCGAAGGCCTCCTGCAAGTCCTCAGATGAGGTCATGTCTTCGAGCCATGAGAGCACGTCTTTGGAGAATCCTAGCATCTCCTTCATGTTCCCCAGCTTTTCTTTCATCATAATCTCCCAAGCTTCGAGGTTACCACCACTTGATCCGTCCTTCTCACCGACCTTTTGCGTGCCAGACGATTTGCCTTTCTTGAAAAATTGCTGCAGCTGCTCAATCAAACCAGTGTACACCAGCATCGGCTGGACAATGGCAAAGAGCCTCTTGCTGTCGTTTGAATCGGCGGATGAACCTTCATCTGATCGGACTGCAGAGGAAGACGTGTCGGCAGAAAGCTTGAGGGTGGATCGTCCATGCTTGTGTTGCATGTAAGCATGGTAGATGCCCCTCTGCAGGAAAGCGGGGCGGTGCTGCAGCCAACTCTCATAGGACTCAGACAGCAGAGAATTGACCATCATGAACTGTACAGTCTCCTCCGAGGAACCTGAACCACCACGAGCTCCAGATAGAGCTGAAAGTCGAACAGGAGATTCTGGAGTTGAAGGCGAAGAGGACAAGTACGAGGTAACAGCCTTGGCCATGACATGACGCTGCTGGTTGGCACTTCCATCTACAAGATGAGAAGCCATTTGGATCATGAAAGGAAGAAACCGCGAGTTGCTCTCCCTACCCCCACCTTTGCAGTCAGTGCTGAAAGAAGCGCCTGTTGCAAACCTGGCCAACATCAGAACAATGTCATATGTTAACAAGCGAAGGCGACTTCCATCTGCTCGTCCTAGAGAATTCAATTGGTCCCAATACTGGTCGAGACATCGTGTGTACTGCCCAGGAGGAACAGATGGCCCCCTCAAGGGAAAGATACAATTACACAGTGTCTCATTATTTCTCAGGGTAGCACCATCCCATTCCTTTTTAGGATTCTTCAGTGCAGCATCAGCTCTTTTAGCCTCCTGATGACATTGGTAGTGTATGATGTTGAAGTGGCTAACAGTAGTGTAAACACAGTCCCCACGGCCACTGCCTGAACTAGTGGCACCCAAGTTCACCCGTTTACTAAATGCATAGACTCCTAACATGTCAGTCGGCCTCAAAGTATACCCTTCTCTACAAACCATGCATGCTAACCCATCCTCTTCTTCTTCCACATCATCCAAGCCTTCAATTATAGGCTGAGACACAACAATACGTCTACCTCCATCAGAAGCAAATTCTTGTCGCATTCCTAGCCCCTGGAGTAGCATTTCTCTTTTCTTGAGAGCACGGCGTCGCATTTCATCCCTTGTAGCATGTCGGAGCTCTTGAATCTTCTCTGCCAAGAAGCCATCACCATTATTTTCTTTGTTGGCAAGGGTATCCAAAAGATTTTCTGCTCTTGCACCAATTTCATTTTCACCAGGCACTCCTTCTAAAGCATGCAGCAATGGCAGAATATCTTCTTCATCGACACACTTTTGTGTAGGCAGATCACCCTTGGCGAGCCCCTTCAACATTGAGAGGATGAGTGGAATGGAAGGCAGTTTTAACCCAACTGTCCATTCTGCACTAGTCCTAAAGCTAGCCTGCCCTGCAGAAGCAAAGCTTTCCCTCAGATGACCTACAGCTGCTTTTGTAATGCCCTTCTCTAGAATAATCTCCTTCAGCCTTTCACCGCAAGAACTTGTCTTGAGTGACTCTGAGACTCGAACAAAGTTTTCAACAGCAGACCTCTGCATTGATGCGTTTTTGCTTAAAGTTTCATCTTTTGGATTTTCCTCGTGTTGTTTCTGCAACTGGTCAAACTCACTCCAGTTCATAAGGTAGGGCTCAAAATGCAAAACAAGGGCCTCCATGGCTGCTGGCTCCCCATACGTCAAGTTAGGTAAGATCCTTGCCACCATCTCCTCGTTTCTTTGTTGCTTGTTTGATTTTTTGGCACCATCAGGAGGGCACAGCCTCTCAAGAAACATGAGAACAATTTTCTTTGCCTCCTCACCAGCACCAGTCTCCTCAGTAGTAGTTGTAAAAACACTTTGGGCAATACTTATGTCACTCTCATTAGCTTCCATTGTAAGACTTTCTACAATTAATAGAATACCCTCAGCTGGCTCCATCGCATCTACTGAGAATGCACGTCTGGCTGTCTCAAGTAGCAAACCCAATGCACCCAGGCGTAATAAAGCACATCTATTTTCACGAATTTTGCAACAATACTTCAGAAGGTTAAGGACTGAACCCAATTCTTCCTGGTTTGATCTTAACTCATCTTCGCGTAGGCTCTGAATCATGCTTAATATAATTTCAAGGCCTCCACATTCCCTTACAGCACCTGCTATAGCAAACTCAACTTCAGGATCTTGTGATTCCTCCCTTTCATCTTCTAACTCTTTAATCATAGGTTCAGTAGCTTCACCATCTAATCCCTGCAATCTGTAAGTGACTGTCATTGGCGGACAATCTCTGACAGATGAAGCAGCAGCAGACAGTTGGCTAGCATTGGACAAAGAATGTTGAGTTTGACCATGGTGCTTTCTCCATACTTGCTCATAGACTTGGGAGATGCTAAGGTCAAGTGAAATTATATTCCCAGCGACCAGTAACTCCATACCATAGTCATCTTCTAAAAGACCAATCAAATCAAGTTGATGGCATATTTTATTTTTCACATCTCTCATCAGTGGGCCAATCTCAGCACTGGAGTATGGATTCCTTGTCATAGAGCCCCTAATGAACTCTTCTTGAGTATGTGCTTTGTTTAGAATTAAGAGATAAACAGGTTCTGGCTTTACTGGGCAAATTAAATTGCAGAGTTGCTCCAAAATGAACAGAGATGTCCGTCTCTTCTTTTCCTTCACATGCTTTTGCAATCCAGAGATGCAAGCACGAATAAATTGACGTTTGTTTGCAGTACTCTCTACAAGCAAGCTATCAAGAAGGTCCTTCAAAAGCCTATTGCAGTCATTAATTAACTTTGTCTTTTGCACAACTAGCCCACGGATAACCAGAAAAGCCTCCAGCACATCAGATAATAAATTATCACTCATAAATCTTGCTCTAATATTGGGAATTTCAAGAAATTTGTTGAGAAGCTCAACAAGCTTGTGAAGAATGAATCCTTGTGAAATGTCAATGCTAAGGCTTCTCTCCTGTGATTCAACATTGGACACTTCTTTTGTTATCAAAGAACATAATGTGGTCAAACAACCACGAACAGTTAAGAAAAGACGTGAAGCTTCTGTATCAATCATTGTCCCAAGTAACTCAAAGTACTCTGCGGCACTTTCACCAGCTGACAGTGTTCTAGGGAGTAACGACATAAGCAAGTTCAATAGTTGAAACTGTCTGGATGAGTTTGATGGGCATAACAAGCTTATGAGAGTGCATATTTCAGATCTTATTGACTGAGAACAAGAACTTAAGATCAAGTCTGAGACCCAGGAGCCCAAGGCAAATTTTGAGAAGTCACCTTTAGATGACTTTCGACATGCACGACGCTTCCACCTCAGTCCATATTTTAGAACCAGGTAGTCAGATTTTTGTGAATCATGCCGTGTTTTTTGCAGTCCTTTCACAGCTTGTGATACTTTATACTGCCTCCTCACAAAATCAAGATATGATGCACCGCTCTCCCATTCTGAATAGCTGAGAAGTGAAATATCCTGTCGTCTTCGACTTCCATCTGGAATCTTTCCTGATAACTCAGACTGAGTCTTGGAAGTGGAAAGATTAGTTACTGAATGGCCAACTGTATCATCATTCTTTGCCTGCATCAAGCTAGATTTTCCCATACCAGGCTCTTTTTCCCCAGAATCAGATTTTGGAGGAGTACAAGCCTGAGAAATGATTCTCAAACAAGGGAGAATAATATGCTCTGAAATTGCAGGATGCTTTGCTCCAACTTTAATAGAAGAAAACAACAACTGAAAAGCAACACGAAGCCTTGCCTCCCAAAACTCATCCACAAGGGCACATGTCTCTGAAAGTAGAAGTAACTCTTCTCGTGTAGATTGTGAAATATCCATGGAGCGATGGTGCTCAAGACAATACATCACCTTCTTCTGAATCAGGTTATTCAGTTCCTGCACTGCATCTGCATCACCTTCAGAGAAGGAAGAAAGCACAGCTCTTGCAAGAGTGCGTGCAGTTCTAGGGCCCTGATGAATGTTGTTTTCAAATAATTCTGACAGAATGCCAGCACTAACAAGTTGCTTCCTGCTGGTTGCATGCTTGGACAGAACTTGTAATAACTCCAAGCATTGAGTTACAAACGTGGTACTACAGCCATAGCAACTACTTGGAGACCTTGGTATTGAACAAGCCGGTAATGCATCTGTATCATTAGAATTCTTCTGGTGCAGATATGTCATTAGAACACGGCGCAGTCCTTGTAATGTCTGAACACTCTTGCTCACTGAATCAAAAGCTGCTTTGCACTTTTCACCATACAAAACACCAAGAAGTGCAATTTTGCGATTTACTTTGCCTGTAGGCCCAGGGAGAGACACCATCATCTGCTGGACAGCATCTTTCTGTTGTGAATCAATCTCCTGCTCACCTATGCTTGATACAAGTTTAATGAGAGGCTTCTTAAATCCCATCAGCTGCTGATATCGCCTGTGAGCATTTTCTGATTCTGACTCAATTGCTGTCAATCCTTTCCTCATATCATCATCGTTTTCCATGTTATCGAATGAGAAACTTGGTTTTGCCATGAAATGGAATTCAAAACGACCATATTTACTGTATCCACACTCATTGCAGAGGAAAGAATCAAGGTTTTCATAGTTAATATTTCTGCATTGTCTACATTGGTATGCATTTTCATGACAATTGCTACAGATGCCATGCTTATCAGTTACAGACCTGCTACACCGAGGACACTGCAATGACTCAAGGGAAGATGCTTGAAGATTTTCATAAAATGAATCAAGCTCAATCATGAAATTGCATGCTGTGATTGGAATGGGGAACTCAACCTTCAATTCTGTCTGATTAAATGTAAGATGGCAGCTTTTAGCACGCTTCCAGAGAGACCAATTATTCTTCAGTTCTGACAAATCTGTTACCGGCCTGTTGTTGTAATATAGGTTAAGTACTTTCACTGACTTTGACTTGCGAGCATCATAAACATTCATTGTCACCGACTGTATAGTAAAGCTTCCAGTACATTTCACTATTATCCTATTGTCAGTGAATTTGGTCTCAGACTTCAAACTTTCAAGCTTCATTCTCGAATATGGAACATCTGGGCAGCTGCAGGTAACACAAGGCTCACTTTCCAAGTAATAGCCATCAAACTCCACTAAGCAACTCAGTGTATTGTATATACGGGAATTCGGATGATTTGCCAATAGCTCATTTTGAGAATGAAGTGTGTCGAAAATGCAGCTTACTACATCAGATGTTAAACATTTATTCAGAAGTTCAGTGTCACTTTGCTTTGCAGTAGAATCATTAGCTTTTCCTAGTAAACATGTCATGAGATCAGTGTACTCAATGATGTTCTGTCCATACATGGGTAGATACTTGACCTTCTGCAGTAGAGTTGTTAACATGTTCTCCTTAAATGAGCTCTTTGCATGGTACCACAGTCCAAATAGAACACTTTTGGCCTCATGGCGCACACTCGTTGAGTTCCATTCCAACAAGAATGTATCAACAAAACGTTTCAAGACATCACCATCCTTACCAGTAAACACTACCACAGCCTGCTCCATGTCCATGCAGGATTTTTCTGAGGAGCCTTCAGAGCTATCGTCACCTTTCCGCTTCTTTTTTGAATCTGATGACTGTGAACCAGTCCTTGTGGAACTTCCAATATCTCCACTCTCTGTTTTCTGTGCATTATGGTTAGCATCTTTTCCTGAATAGAATGCTAGATTTAAAAGCTTGAGAGTCTGAACGATACATTCTTCACTGAAATAGTAGAAGTTATCCATTAAAAAAGGAAGAAGATCTGTGTGCTTCAAGCAAAATTTTTGCCAATTTCTTGGCCTTGATGCAGCCACATCACAAAGAGTAGACAAACATTTTATAAGCTTAACACTTCTCTCATAGGGCACAGGATTTCGAAAACCTCCAGACTTATTAATGATTTTATGAAGTTTCTTGACTTCATGTGAATATTGCCATGAATCCCTGACACTGTAATAATGAGTCTTGCTGCCACACAGATGAAGAAATAGCCTCCTTGCATACCTCCGAACAAACGTTGTATGAGCATTGCTGATATAACTACAAAGAACATCTTGGTATCCATCTAACTTTAGATCCTTGGTGTTGGGAACCTTGCAACTTTTATCCTTATCAGCTGATTTTTCCTTTTCTGGTCGAACCATGCTATATACAAGCCTGAATGTATTCTCCAACAACAATTTGTAGTAGTCCATGAAAAGATCAGTGGGATGGGACTTGGCATATGAATCTGAGAAAAAGGGAGAGAAGTTTCCCGCTGGTAACTCTCTCCGTACTGTCAATAGGGATCCACAGCCTGAACTAGAAGAGCCACCTTCACCATTTATGGATGATGACTTGAAAACATGAACAAGTTGTTGCAGTATATCCATCAAATAGTTCAGAAAGGATTGCTGCCTGAGGGCAGAACAAGCACGAATTAACTGGGAAGCAAACTCATTTTTATCATGGTCATCATTGGAGGATTGAAGAGTCGTGGTTGATACTTGGACATGAACAGGACCTTTTTCTGTCAAATCAGAGCTCCCACCTGACTTCGAATGAGAGCCATCAGTCCCAGGCTGATGCCAGTTACGGAACATAAGTGTGAAAAACATGAAAACAAGGATAGATACTTCTCCGAAAGAACAACGTGTTTTCGCAGGAAATGGTTTACTTATATTGATTTCATCTATAAGCCACTTCACAAACTTTTCTAAATCCAAATTTTCAGGTTTTGTGCTATCCATGAAAGGTCCGCCAACTGCAGATGAAAGTCTGTAAAACAGCTGCATTATAGGTATAGCTCGAGTGCCAGCAGTGGTCTCCATCCAGCCACTAAGCTCTTCAATTAAACGACTAAGTAGCAAAGAGTTAATGGCCCGTTTTGATGCAGAAATTGATACTGTCCTTTGTTCGGTCATGGAACCATGGAAATCTACAGACTCACTTGCATCCAGTACATGAATTGACGATGGTGAGGTCTGGATAGTTCTATCAGCAGGAGCTTGAAGGACACTGGAATCTGTTAGTTCATCAACAGAGAAATGAATTTCATTTCCTTCTCCCCCAAATGTATCAAGCTCAATTGGTATTGCTGACATGGGATGATCTCTTGAATGTGGTGCAGGTAGACGATCTGCATCAAGTATCTCATAGCATGTTTCACACAAGTCAAAGTCTGGACATATGTTGCAGTGCCACCTTCGCCTAAGTATTGGAACAGTGGAACAACCATCACAACAATATTGCACTGAGGATGTGGCAGGATCTTCTTCAATCATGACCTGAGCATTTCCAGTGGTTGAATTTGAAGCAGCACTTGCTTTTGCATGATTGTCAGGAGCATCATCATTAGCAATCATTGTCTGCTTTGGGAAAGGGACTTGGAGAAATCGTGATGAAATAGCCAAACTGCTTGAAGTCTGGACTGCTTCATATGGCGCAAATAGTAACTTCTTCAATAAAGCAACTGCAGGTGCTACTGAGACTCCAGATTTTTCATTTGAATGTAAGGCCAAGCATTCAGCATAGCTATAAATAAATTCCACACAGGGTACAACTAGGCTATTTATCCTTTGCGTATCTGGCCTGTCTAAATCCAAAATACCCCAGAAAACTTGCATAAGACCATCAACTAGTTCAGTGCCGTGGGTCTCAAGAAAAGAAGCCAAGTTTGATTTCCTGTGCACAGCAACTTTTGACACTGTGTGGATCTGGGCTATGAATTCTTTTGTAACCCAACTGGATGCAGCACCTCCAACTCCTATTCTTGAAGTAATTGATGGAAGTGATTTTATTACCCCTAGAAGGCGCATAGTATCCTTAACATGATAGTATATTTCCTTCTTCGGGAACACAGCCTGAAGGACACGGCATGCAGCAGAATGTAACAGAGGCTCCCTGTCACTCTGAAAGATTGTTTCCAGCAAAGATCTGCATTTTAGATTGTTAAGTTCCATGTCTGCATCGATTGTGTCCGTACAGAAACCTGGTTGGCAAAGCAGGTATATCCGTGAGAGGATCCTGAGAGCATCTGCCAGAACCTGCTCCTGGATAGGAGCAGCTTGCATCGTTTGAGCCTTTTTTCCAGACTTTCCACTAGCAGAACTACCACCTAGGACATGCGCTTCCATATCAAGTGCAGCATCCATTTTTTCTTTCCATCCAAATTCATCTTTGGCACGACCATACACTTCAATAGAATCTATCCGAGGAATAGATGAACCATCGAATGTCCGACCAACAACAATTGTGAATTCTTCGTCAGCCAGAAGTGATTCAGCAGTAGTGAACGGAATATCATACCAAGATCTCATGCCTTCATCCAGCTTAATGACTCTATGAAAAATTGTGATTTCTGAAGGGATATTGCTCGCAGATGTGTTACCCACATGGATTCGGCAACCAACCATGACAATATCAGGGTTTGGGTTTGAAATAGTCACCTTGAAACCAGCGGATGTCAAACTTTCTAAATAACCATCATCTGAGCTTAATCTTTGCTTGATGCTTTCAGAATCACTACTTTTGGTTGTGTCACTATTGAATTTCACATCACATGTGATACATGTCGTCTTCTCAAAAAAATCAAGTGGAAATTCTGGTTTGGTGCCAGCATAAGCTCTACTACTAAGGATACTGCTGCCCAACTTCTTTGTCTGTTCTGCAGTAAGGGTTGTTGAACTATCACTTCCATTAGGTGTATGTGAATAAATGTTAAGGCTTCCATCATCATACAAAAGAAGACAATGAGCTTTATCTTTGGATAAAGGCTTATATGCAGCAATACCAACAACTGGAGCATTTGAACCACTTGCATGTCTCATGTTATGTGCAAACAACTCGTGAGGACCCAAAGATACAGCAAGAGGAGAGTTTGATTTAAATTTTGATAGGCAAGCAAGGGCCCCACTGCCAGCTATTAGCTCTCTCCAACGGTACAGGCCTGCTGGTTTCGATTTACCGTCTTGATCATTCTCACATATGTAGGACAATTCAGTAATTGACGAGGAATCGCCATCCAAGCGCCCCATGTAAGTTGTGCCATCTTGATGAGACACAAATAGAAGCCTGTAAGTTGATGAGAAGTACAATGAGAGACCTTTGTGCATAGATACTGCATCTTTCACCAAGACTGTATCAGTCAATGTTTTCGCACCAACATCACCCGCCAAGGCAACATTCAACCTATACAAAAGGCCTCCTTCAGAAAGAACAAGAAGCACCAACTTTCCCATTGAGGAGGGAACAAGCGTGGCATCAACAATTATATCATCAGCCACAGTAAAATAATGCAACGGGCTAATGTTGTCCTGCGAGAGATCATATATCTTCACAAACTTGTTTGTTACTACCATGAGTTGTACCTGAGAACCTGGAACCCACTCCACGCAACGAATATATGCTCCTTGCAGAGCAAGTTCAATTGCAAGCCGATCAGTTACCTCACCACGGCTATTTAATGTTAGTACTTGACAATCCTCATACCCGGCAACAGATAGGTAATGTTCCACCAATGGATTGAAAATCAAATGAACAATTTCAAAGCGAACTATGTTCCTGGAGAGAGGCTTCACATTTGTTTTGTCTGCTGTAATAGGAGCTGCAGTAGGCTGTCCAATAATTTGTCCCACATCAAATATAGCTACTTTATCCCCTTCTCCAACAGCAAGCTTACCTCGAATGCTGATACTTAGCAAGGATTTAGTAAGAGACCCATTTGCAAGATGCGACTTAAGTTCCCTTGAATTTGGATAGTCTGCTTTTATCTTCAGGTCCAGCGATCCACTTTTGAAAGCTTTCTTCAGTTGAAAAATATCAGAAGCTTGTGACATGGGCATTTCACCTCCTAAAAATACTTTCCTGTCCTTCAAAAGATTCAGCTCTCTTTGGCTAAGTATCATTGGAAGCAACTTCTTGCAGAGTTCAAGCATTCGAACTTCAACATCAAGATTTTTAAGAAATACAGGAAGCTCATCACTGAAGCCTTTCGGCACAGATAGCTTGATACAATTCTCAGCTTCAGTTGAGATGTCATCTTCAAAATCAGAACCACTGTCTGCAACAGGCTCCACATCCTCATGATAAGGCAATATTGGCTGGAAACTGCTCGTGACAGGAGGAGATACACTAGAGGTACCAGTAAATTTCCGAGGTTTCAAGCACTGACAGCTGCTTCCCCTCACACCACCAGCTCCACAATCACAGAAGAAACGGCTTGACCGAGAATAAACAACACGATGCCCTTGATGGCACACCTTGGCACAGACAGAACAGCAACCCTTGGAAACAGTCAAATCACATGTATAGCAGAAGTACCAATGCTGTTCCATGAAATTGCTACCACTGGATGTAAATGTGCACACTTTGGTTGCAAGAGCTCTTTCACTGTTTCCATCCTCTTCCTCATCTCTATCAATACTGACCAATTCCCCATCAGATGTTCCATCATCTTCATCTTCCTCGCCGGAGCTAGCATCACAATCAACAGTGGAATTAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.89002
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0428600.1 9 3590248 A G
Osa09LNT0428600.1 9 3597000 A T
Osa09LNT0428600.1 9 3592459 T C
Osa09LNT0428600.1 9 3592962 T C
Osa09LNT0428600.1 9 3593070 C T
Osa09LNT0428600.1 9 3594598 A G
Osa09LNT0428600.1 9 3596960 C T
Osa09LNT0428600.1 9 3599143 T C
Osa09LNT0428600.1 9 3600155 A G
Osa09LNT0428600.1 9 3598338 G A
Osa09LNT0428600.1 9 3600600 A G
Osa09LNT0428600.1 9 3600185 C T
Osa09LNT0428600.1 9 3596187 T G
Osa09LNT0428600.1 9 3597253 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0428600.1 osa-miR5537 Translation 3.5 17.51 1 22
Osa09LNT0428600.1 osa-miR5789 Cleavage 4.5 18.634 1 21
Osa09LNT0428600.1 osa-miR5798 Translation 5.0 23.143 1 21
Osa09LNT0428600.1 osa-miR5808 Translation 5.0 14.523 1 24
Osa09LNT0428600.1 osa-miR5808 Cleavage 5.0 18.047 1 24
Osa09LNT0428600.1 osa-miR5817 Cleavage 5.0 17.0 1 24
Osa09LNT0428600.1 osa-miR5825 Cleavage 5.0 16.024 1 24
Osa09LNT0428600.1 osa-miR5828 Translation 4.5 23.015 1 21
Osa09LNT0428600.1 osa-miR5337b Cleavage 3.5 20.007 1 21
Osa09LNT0428600.1 osa-miR167a-5p Translation 5.0 22.438 1 21
Osa09LNT0428600.1 osa-miR167b Translation 5.0 22.438 1 21
Osa09LNT0428600.1 osa-miR167c-5p Translation 5.0 22.438 1 21
Osa09LNT0428600.1 osa-miR169a Translation 5.0 13.64 1 21
Osa09LNT0428600.1 osa-miR396a-5p Translation 4.5 16.5 1 21
Osa09LNT0428600.1 osa-miR396a-3p Cleavage 5.0 13.952 1 20
Osa09LNT0428600.1 osa-miR396b-5p Translation 4.5 16.5 1 21
Osa09LNT0428600.1 osa-miR396b-3p Cleavage 5.0 13.952 1 20
Osa09LNT0428600.1 osa-miR396c-5p Translation 4.5 16.5 1 21
Osa09LNT0428600.1 osa-miR398b Translation 3.0 15.649 1 21
Osa09LNT0428600.1 osa-miR399e Translation 4.5 13.972 1 21
Osa09LNT0428600.1 osa-miR399f Translation 4.5 13.972 1 21
Osa09LNT0428600.1 osa-miR399g Translation 4.5 13.972 1 21
Osa09LNT0428600.1 osa-miR159a.1 Cleavage 4.5 15.176 1 21
Osa09LNT0428600.1 osa-miR159a.1 Translation 4.5 14.282 1 21
Osa09LNT0428600.1 osa-miR159b Cleavage 4.5 15.176 1 21
Osa09LNT0428600.1 osa-miR159b Translation 4.5 14.282 1 21
Osa09LNT0428600.1 osa-miR167d-3p Cleavage 4.0 19.944 1 22
Osa09LNT0428600.1 osa-miR167e-3p Cleavage 4.5 20.35 1 21
Osa09LNT0428600.1 osa-miR167i-3p Cleavage 4.5 20.35 1 21
Osa09LNT0428600.1 osa-miR169b Translation 5.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169c Translation 5.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169d Translation 4.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169e Translation 4.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169f.1 Translation 4.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169g Translation 4.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169h Translation 4.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169i-5p.1 Translation 4.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169j Translation 4.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169k Translation 4.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169l Translation 4.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169m Translation 4.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169n Translation 5.0 13.64 1 21
Osa09LNT0428600.1 osa-miR169o Translation 5.0 13.64 1 21
Osa09LNT0428600.1 osa-miR172c Translation 4.5 12.066 1 21
Osa09LNT0428600.1 osa-miR172c Cleavage 5.0 21.85 1 21
Osa09LNT0428600.1 osa-miR166i-3p Translation 5.0 23.002 1 21
Osa09LNT0428600.1 osa-miR408-5p Cleavage 3.5 4.486 1 21
Osa09LNT0428600.1 osa-miR413 Cleavage 5.0 17.261 1 21
Osa09LNT0428600.1 osa-miR413 Cleavage 5.0 18.059 1 21
Osa09LNT0428600.1 osa-miR418 Cleavage 4.5 10.958 1 21
Osa09LNT0428600.1 osa-miR419 Cleavage 5.0 21.13 1 21
Osa09LNT0428600.1 osa-miR419 Translation 4.5 12.551 1 21
Osa09LNT0428600.1 osa-miR426 Cleavage 5.0 13.771 1 21
Osa09LNT0428600.1 osa-miR816 Translation 5.0 12.431 1 20
Osa09LNT0428600.1 osa-miR816 Translation 5.0 22.266 1 20
Osa09LNT0428600.1 osa-miR1426 Cleavage 4.5 15.692 1 21
Osa09LNT0428600.1 osa-miR1432-3p Cleavage 5.0 18.891 1 21
Osa09LNT0428600.1 osa-miR169r-5p Translation 3.0 13.64 1 21
Osa09LNT0428600.1 osa-miR1438 Translation 5.0 14.897 1 22
Osa09LNT0428600.1 osa-miR1442 Cleavage 5.0 17.464 1 20
Osa09LNT0428600.1 osa-miR1442 Translation 5.0 15.593 1 20
Osa09LNT0428600.1 osa-miR1855 Translation 5.0 15.151 1 21
Osa09LNT0428600.1 osa-miR1428b Cleavage 5.0 9.655 1 21
Osa09LNT0428600.1 osa-miR1428c Cleavage 5.0 9.655 1 21
Osa09LNT0428600.1 osa-miR1428d Cleavage 5.0 9.655 1 21
Osa09LNT0428600.1 osa-miR1428e-3p Cleavage 5.0 9.655 1 21
Osa09LNT0428600.1 osa-miR1865-5p Cleavage 2.5 20.121 1 24
Osa09LNT0428600.1 osa-miR1870-3p Translation 3.5 21.726 1 24
Osa09LNT0428600.1 osa-miR1871 Translation 4.0 19.968 1 24
Osa09LNT0428600.1 osa-miR2101-5p Translation 4.5 17.591 1 22
Osa09LNT0428600.1 osa-miR2101-5p Translation 4.0 14.235 1 22
Osa09LNT0428600.1 osa-miR2101-3p Translation 5.0 15.176 1 22
Osa09LNT0428600.1 osa-miR396f-5p Translation 4.5 17.328 1 22
Osa09LNT0428600.1 osa-miR396f-5p Cleavage 5.0 17.285 1 22
Osa09LNT0428600.1 osa-miR2118h Translation 5.0 19.246 1 22
Osa09LNT0428600.1 osa-miR2118k Translation 5.0 19.246 1 22
Osa09LNT0428600.1 osa-miR395x Translation 5.0 12.487 1 21
Osa09LNT0428600.1 osa-miR1862f Cleavage 4.0 17.742 1 20
Osa09LNT0428600.1 osa-miR1862g Cleavage 4.0 17.742 1 20
Osa09LNT0428600.1 osa-miR5506 Translation 4.0 15.259 1 21
Osa09LNT0428600.1 osa-miR5506 Translation 4.5 16.771 1 21
Osa09LNT0428600.1 osa-miR5509 Cleavage 4.5 14.107 1 21
Osa09LNT0428600.1 osa-miR5515 Cleavage 5.0 17.737 1 21
Osa09LNT0428600.1 osa-miR5528 Cleavage 4.0 15.546 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0428600.1 9 nan Morphological trait Root C711 G103
Osa09LNT0428600.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0428600.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0428600.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus