>Osa09LNT0428900.1

ATAACAAAACCCAGGTTTTATGATTGAAGTTGCAAAATCAAAGGGGATTTTTTTAGAACACGCAGGAGATCTGCATATCATTTCATTAAGATAGAGGGAAGAAGGTGGACAGCGTTAGAGAAAAACTCCGACACCCACCCACCCGAAAGTTCAACAGCAACACCACACACCCACAAGGAACAAAACGGCCCTAGTATCCTAGCACTATAGCCTTAGACAAAAGATCATAGAGCTTAGAAGCTCCTGCTAGTCACCGTCCTGGTTTAAAGGTTTCACAAAGGTCCAACCATATTAAAATCTTTAGTTATTTTTTATCCACTTTGACCTATTTTGTTCAAGGCATTAATAAATTTATCCAGCTAGAGTAATTAATTAAGTACTAATAAATAACTCGATAATATTCACAGATGTATTGCATGGCATTTAAATGAAAAATGAGATTTTATGAGACCTTGAGACCACAATACCTGTGTTATGTGCCACAACCGTAGTATGTAGGGTTTTCTGCAATTTTGACATGAGAATATGGGTTTTCTTAACCTTACTCTTCTTTGTATGGATGACTGAACAACTTCACTCCTGCGGCTGCACAACAACTGCAAACATGGTTTCTTTTTCATGAGGTGTAATTGGTTATGGTATTCTCTCCTAAAACTCAGGGACAAATGGTAAAGGTGCAGCCTGTGCCAGGGAGGCAAAGGAGAATGCAGCCTCGTGAGTTGATGATGTTAATGTTCCTGGATGCTACACATGAGAAGTGAGAAGCAAGCAATAGTCATCCTTAATATTGCAAGGGAAGCCAGGATCGATGCTGCTCTGAAGAAACGGTCTAGAGTCATGTCAGGAAAGGTGGCAGCAAACCATCCAGCTAGCACGTTATCTAGGCTTTCATATACTAGCTGTCTAGTAGGAGTATTTCTCAGGTTTGTGCATATGGTGGCCAAATAAAAATTAGTACAAAAGAGACCCATATAAAAAGGGACACATTTTAGTATTATAAATCTGGACAATAGTGATACTAGGTTACTATATTATGAAACAAATAGAGTACTTTGTTTTGGGGATGCAACTAGTTGGACTCCAACAGGGAACTCTTGAACATTTTTTCTTATTATAAATAGTATGACTACCAAAGT

Explanation	CPC Score
noncoding	-1.23401

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0428900.1	9	3632422	G	A
Osa09LNT0428900.1	9	3633019	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0428900.1	osa-miR5837.1	Cleavage	4.5	13.89	1	21
Osa09LNT0428900.1	osa-miR397b	Translation	5.0	20.53	1	21
Osa09LNT0428900.1	osa-miR1442	Cleavage	4.5	13.443	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0428900.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0428900.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0428900.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0428900.1	9	nan	Morphological trait	Root	C711	G103

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus