>Osa09LNT0429100.1

CCTCTCGTCATCGGCCGGGAAATATTCAGCTTCTCTGGTGGCGAGGAAAAAAATCCTCTCGACGCAGCGACGCAACGAGAGGGGGCGCTGCGGCGGGGACGGCTGCACGGCGCGGCGCGACTCCGACGCGACGGCGACGGCACGCTCTCTCCTCCGGCAGTTGACTCCTCCGGTGGTCACCTTCTCCCCTGCTTTGGGAGGAAGTCTGAGAGGATGGTGGTTCAGATACAGAGTGAATGAGCAGACATGTACAAGATGATGGCTTTTGCAGGAGCAACAAATGTTGATCTCTGAACCATTGTATATTGCTGATGTAACCATTTGGTCTAGGAGTGGGTGTGGCAGCTCACATTTATTTTTATAGCTCAAGTGAATCATGACATAGTTTCATCTTTTTCTTTTTTTATTTTCAAATTTCACTACTATGACTGTATTTAGTTGTCTCTGTATTGTCAAGTGACCTCAAGCTTTGTTGGGTGATGCCTCCTTGCCTTAAACCGGATACAGGCCTTGATGATACTGCAATAATTTTGTTTTAATGATTAATCAATGTGGTTTTCGCGTAATTGATGAGGTTACTGCAATATTTTTTTTACTGAA

Explanation	CPC Score
noncoding	-1.28808

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0429100.1	9	3928763	A	G
Osa09LNT0429100.1	9	3929293	T	A
Osa09LNT0429100.1	9	3929675	C	G
Osa09LNT0429100.1	9	3928958	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0429100.1	osa-miR1854-5p	Cleavage	3.5	9.785	1	21
Osa09LNT0429100.1	osa-miR1879	Cleavage	5.0	13.786	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0429100.1	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0429100.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0429100.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0429100.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus