>Osa09LNT0429700.2

TGCAGCGCCACCGGCACCGGCGCCGCATCGACGCCGTCGACGCCGTCGTCATCGGAGCAGAGGCGCTGCAGGAGGCCGCACTTGAGGAGGAGGGGGAACTACAGGGTAAAAACACCTTATGTAGCTGATACTTTGTGTTGTTGACATGTATGATGAGATCAGCAGGTACGTCTGACAGTACAGACCTGACAGCTTCTTCGGTGTAGAATGTGTCAGGCTTTGTCCCAAGCTTCATGTACTTCATGGTGAAGAACTTCTTGATATCCTCAAGCAGCAGCAGCAGCACAAGGCCCCATCATATAGGCATGACTTTGTTACTTGCTCTTCCTCTCCTTTTGCTGTTCTCCTTTTTCTGCACAAGATGTTGCCAACTTGGCCTCATCCCTCTGTCCATTTATGTAGGCTGGCCTCAGTGTTCAAATGCAGGCTTGCCATGATCAGCACCTATATATATTGAGTTTGATATATAATTGATGATATTGATGGACAAAATTCTTCTCTGGCTCTGTTTCTTTTAAAA

Explanation	CPC Score
noncoding (weak)	-0.829571

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0429700.2	9	5025756	C	T
Osa09LNT0429700.2	9	5026072	C	T
Osa09LNT0429700.2	9	5026116	C	T
Osa09LNT0429700.2	9	5026487	A	C
Osa09LNT0429700.2	9	5027170	C	T
Osa09LNT0429700.2	9	5028268	A	T
Osa09LNT0429700.2	9	5026926	G	C
Osa09LNT0429700.2	9	5025321	A	G
Osa09LNT0429700.2	9	5025651	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0429700.2	osa-miR5819	Cleavage	4.5	16.41	1	21
Osa09LNT0429700.2	osa-miR167a-3p	Translation	4.0	15.662	1	22
Osa09LNT0429700.2	osa-miR2905	Cleavage	3.5	16.271	1	21
Osa09LNT0429700.2	osa-miR5486	Cleavage	4.5	18.053	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0429700.2	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0429700.2	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0429700.2	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0429700.2	9	Sub-1(t)	Resistance or Tolerance	Submergency tolerance	C1232	RZ698
Osa09LNT0429700.2	9	apd9	Others	Others	CDO590	G103
Osa09LNT0429700.2	9	nan	Morphological trait	Root	C711	G103

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus