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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa09LNT0429800.1

CTGAGGATGTGCCTAGCTGAGCGTGAGGTGATCTTTGCTCTTTATCCGGAGACCCAATCACCGAGTCATTACCAGCTTTTGGTCCTTGAGAAGTTGTCGCCTGTGCTTCAGCTTCAGGAATCTCTTGATTTAGACCCACATCCGACTGGTTTCCAGTCGGGGGCTCTTGGGTTGTTGCAGTTTCAGTAGCTGCCGACTGGTTTCCAGTCGGCGGCTGGTCACTCGGATTGGCCTTGTCATCCGAAGCATGGGCGCCAGTCGGCTGACTTTCGGCAGTCGACTGGTTTTCGGCAGTCGGATCAGCATCTTTGGATAAATTTGACTCTGTGGCAGTCGGATCAGGATTTTTTCTAGTTGGATCTATATCAGACGGTTTCCTGCAAAGTGTCCTTTCGGTATTCAGCGTAATTTCTATGAGAGAAGCATGCCAAAATAAAATGGTATCGAGAAGTTTATACCTGGAAGATGTTCTAATCTTTGGCATTTGACGGCCAGCCAGTTTTTTCCTGGGCATGGTATGCTTTGGGAGTTTATTGGGCGTGCCCTTGTCCCCAGATTTGTTGCTGTCATCGCCTTCGTCGTCATTAAGCACCAGCTTTCTCTTGCGAGAACCTGTCTGCCCAGCCGGTTTGGAGGTTTGAGGTTGCGGGTCTGACCTGATTGTCGGCCCTCCACTTCCCTGAACGGTGTGCTGGCGAGGAGATCGGCGTTGAGCAATTGGGGGATCAGATTTCATCAATACGTACTCCT

Coding Potentia
Explanation CPC Score
noncoding -1.12086
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0429800.1 osa-miR5534b Translation 5.0 21.855 1 21
Osa09LNT0429800.1 osa-miR416 Translation 4.5 21.705 1 21
Osa09LNT0429800.1 osa-miR1848 Cleavage 4.5 22.03 1 21
Osa09LNT0429800.1 osa-miR1846a-3p Translation 3.5 22.914 1 21
Osa09LNT0429800.1 osa-miR1846b-3p Translation 3.5 22.914 1 21
Osa09LNT0429800.1 osa-miR1846c-3p Cleavage 4.5 22.914 1 21
Osa09LNT0429800.1 osa-miR2118b Translation 5.0 24.743 1 22
Osa09LNT0429800.1 osa-miR2118d Translation 4.5 24.743 1 22
Osa09LNT0429800.1 osa-miR2118e Translation 3.5 24.743 1 22
Osa09LNT0429800.1 osa-miR2118g Translation 5.0 24.743 1 22
Osa09LNT0429800.1 osa-miR2118l Translation 5.0 24.743 1 22
Osa09LNT0429800.1 osa-miR2118n Translation 5.0 24.743 1 22
Osa09LNT0429800.1 osa-miR2118o Translation 5.0 24.743 1 22
Osa09LNT0429800.1 osa-miR2118p Translation 4.0 24.743 1 22
Osa09LNT0429800.1 osa-miR2118r Translation 3.5 24.743 1 22
Osa09LNT0429800.1 osa-miR5144-3p Translation 5.0 24.758 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0429800.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0429800.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0429800.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0429800.1 9 Sub-1(t) Resistance or Tolerance Submergency tolerance C1232 RZ698
Osa09LNT0429800.1 9 apd9 Others Others CDO590 G103
Osa09LNT0429800.1 9 nan Morphological trait Root C711 G103
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus