© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa09LNT0430200.1
TCATTGGATCTTTTCTTCTATGAATTGCTAATGTTCGATCCTCTATTAACTTTGTGCTGATGAACACTTTCGATATATTTGCACTAAATTCTTGCGTGGGGAAGGAAGTATTTTGAGAAAGCTTGACTTTTCTAAGTTGGTTTTTCTTATTCAGACAGCTTCTTGCTCAACTCAAACGGGATAGTTCTGGTGGAGAAGGTTCAACCTTAATTATGCAGTATTGCTTCAGGTACCCTTTTATTTTTCGTACAAGTTGATCCTTGCTTTTGTTATCACTGCATGAACCATCGGATACTTGTTTCAACTTGTATGAAATGCGTGCATTATGTGAGATAGAAGATCACTATCATCGGTTTTCATAGGAGGGTGGACCTTTTTATATCTTTAATACTTGGAAAGAAGCTTCTTGCTCAAATTACTTAGTATTGTCTTATGCGAAGAAGGTTGCTGAATTGTTCTTTTATTGTCTATTGTATGCCTTATTAGGCTCATGATAACTATTATGATGAGGCAGTCATTCAGTTTTAAGCATGTTAAAGAACATAATGGTGTTTGCGTTACACTCTATTCTTTCTTCTGGTCAGGCTGTGGCACCATGATGTATACTATCAATTCGGATGCTTTAGAATGGGGTTGTTGCTTTGTTAGACCTTGACACTTAACTGCTATCTTTCACCAAGCATTAATTGTTTCTACCAAAAATTAGTTTATTTGGGAGATTCATGACTAGTATTTCCTTTCCGCTTTGTTAGTTGCACTCGTAGGTAAATCCATAAATGTTACATTCCATGTGTCCTATACTCTGTAGTTGTACTTTCTGTAGTTAAGATTGTAGCATTTTTTATGTCTTAAAATTAGGTTTGATTGCATATTTCTTTGTTGTTCCTTAATATTTCCTTATATAGCACAGTATTAACTGAAGGATCACAAATTTGACACCAATAACATATACTCCCTCCGTCCCAAAAAGACTCAATTCTTGGGTTTCCGTGTCCAACGTTTGACCGACCGTCTTATATGAAATTTTTTTATGATTAATATTTTCATTATTGTTAGATGATAAAACATGAATAATACTTTATGCATGACTTATCTTTTTAAATTTTTTTCAAATAAGACGGACGGTCAAACATTAAACACAGAAACTCAGGAATTGAGTTTTTTTAGGACAGAGGAAGTAGTCAGTAGAGTACAGAATAAGCATTTCTATATTGTTTAGCAAAGATAAGGTTGAGGGAAAAAAGGAGTCACATCATTGGTCAAATTTTGAATTTTGAATTGCTTAGGTTCCCTTGATTGGTTGAAAATGCTTTGGATTTCCATGCATTGGAATCAATGTCCTAGAAATGCTTGTATTTTTGGAATGGAGAGAGTAGTTGACATATAATCTTTGTGGTGTCCCTGTCAAAATGTCCTGCTCCAGTTTATTGTTTACTGTTTAGAAAAATGACTTCTTAATAATCTCAGTTTATAGACATTTAATGGTAATTCCATATTTATTTTAAACCTGTTGGATTTCCTTTGCATCTGGAAAAATCCAAGACAAGTTTTGTAGAATTTCATCCAAAATGAGTTTTAAAAAAAATCATGTGCATCGAACTTCAAAAGGCCAACAGCAGTTCTCTGAAATGCTCAAGCCTATTATTGCTTTACGCCTTTACTTGCATCTTGTAGTAGCAATCTATAAGTTCAGCTGGGGTCAGCCTGCAGGTTGAAGACGATATATGAACTAACTGAGGACAAATTTTTGCTGTAGAAATCAGAGACTATAGTCTTCACATTGTTTGCTTGTTCATCATTGTAAGGTATTATGTGCTCAGAGACTACAGTCTTCACATTGTTTGCTAGTTCAGCATCAGCATTGTAACGTATTATGCCTTCTCTCTCCCTCCTATACTGTTATTTTGGGCGAGAATTCTCTACTATTTTCTACATTAGTTATTTTCTATTAGCAGCATTGAACAATAGCCGATGGATTTCATGTCCATTCATGCAAGAGCTCTGATTGTTTCTGTAGAGTAACAACTTGAATACGAATTCAAGTAGTAAATGCACAAGCCAAAGGCATAATATACCCTATATATAATCCCTTATATTATGGGATGGAGGGAGTATGTTAAAATGAAGTCACACGTCTATAGGGAATTGAGTTATTTTTAGTATTTTGTTTGGATTATTTTGTAGATAAAAAATTATTGTTTTCAAGTAAGTGCACCATAAACTTCCAAAGGTTCGCATGACCATGAGAGGGTACCTCGTATTACCAAATATTGTAAATGTTAGTACAATGCACAAATCCTGGAGCAAATTTCTTTTTTGTTGACCAACACGCATGCAAAACATGAGATTATCCATTAACTTAGCAACATAAAAAAGCAGCATCACGAAAGTTAGCTCCACTTCTGGATATTTTACATGGTCAGGATGCTAAGTTTTTCTACAAAACAGCACTTCCATTCTCCAAAATAAAGATACTAGACCTAGAGCTAATTTCAGAATAAATTTCAGTGGTAAGATTTTACAACATGCAGGCTTCTGATGGAATTCTGTCTTCATGTTCCAGCAATTGTTTTACACGGCATCAGCGCCTCCAAGCATGTGGCCACCATCAACAGCCATAGCGTCTGCATAGTTTGCTTGATGCTGGCTCCCAGCATATGGTGCATTCCTTCGCACACGATTGTGCTCATCACTTTCACCATCAGATGCCTCAGCAAGCCTTGCGATGGCATCAATCAACGATTGCTCTTGCTCCTTCAGCACTTTCTTTGCCTTCTCTACCTCCAGGGGATCTGGATTATTAATACTAAAAACCCTCTCCACCTCTTTTATGAGGCTCTCGGTATGAAGTATATCAATGTCATCAGAACTTCTCTTGCCAACTCCATTTTGTGAGGGTGGAAAATCCTTCCGGGATACATGCTTTGGTAATCCCCTCCCCCTTCCTGTACCTGGTGTTGGACCACCTCGGCTAGATGACTTCTTGCCTCCACTACCTGGAGCACCTCGGACTCCCTGATATATCCCAGGGTCATCACCTTGCCATCTTATATCTTCAGGTCCCATCTGTTTAAGATCAACCCACTCCCATGATTCATTAGCTGTATTTATGTCATAAGCCAATGCATACAGATCCGTTTCTGGATTATAATCAGTAATAGTTGCTTCGTAAAAACTGTTATCTTCAGGCCACCGGCTCATGACTTTACGATTAATTAATGGATTAATATGCAGTGCTTCGGAAGGTTCAAAAGAAACAAGGCCAACAGGAAAGTTTCTATTCATATGTGGTCCCCTTCCGCTAGGACCAGCTGAAGATGTCATGGCCTTGACTGAAGGGCCCCCTGGCACCTTCTGACCTGGTTTGGTCTTTTTGCCTTTAGCTCCTGATGAAGCTCCCTTTTTAGCTGTTGAAGATGATGGTGGTCCTTGTAAAGCCAACTGCTGTGAATGCATAACAGGAGGCGGTGCAGGCAGGGCAGGAAATGATTGCGATGTCTTTTGCCTCTTACGGCCCGAGGTGGTAGGGCTAGGCGCTAGATCATGCATAGGCTGAGCATTATTGGGTAACATTGCTTGAGGCCCTCCTGCTGATCTCCATTCCCTTATGCTACGGATAATATCATCACTGTTGACCCGATTTAGTAGTTCCCTGTGGTCTACATCAGATACCCTTAGCTCTTTCCGAAGTTCTGTTATGAGACCTTCTTTCTCCCATGTAATGGCGTCAGACTGGGCTTTAAATGCACGAAGAACCGAGCAATATGCTTCTTGTTCAAGATGATGGATTTGTGTTGCCATATCAGTATGGGCTCTAGTGTATGAACCAGCAGGAACAATAGCTCTTCCATTACCACTGACACGTCCACTGCCTCTAATACCCCTATTGCTTGGATATGGTGGAGGAAGATCATCAGCAGTTCCGCTGCTGTCGGATGCCTGGCCGCCGCCGTAGTCCACCGACTGCGGCGGCCCCCCGCCGGGGAGGCGCGCGCGTGCCCCGGCCAGAGCTGCACCTCGGGAGGAAGCGGGCGCGGCAGCGGCGGCGGAATCCGGCGAGATTTGGGGGGGAAGCGAGCTGATCGACGAGGAGAGAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa09LNT0430200.1 | 9 | 5836494 | T | C |
| Osa09LNT0430200.1 | 9 | 5838764 | C | T |
| Osa09LNT0430200.1 | 9 | 5838510 | T | G |
| Osa09LNT0430200.1 | 9 | 5836688 | A | T |
| Osa09LNT0430200.1 | 9 | 5836578 | A | C |
| Osa09LNT0430200.1 | 9 | 5837684 | A | T |
| Osa09LNT0430200.1 | 9 | 5836448 | T | C |
| Osa09LNT0430200.1 | 9 | 5840719 | T | C |
| Osa09LNT0430200.1 | 9 | 5840946 | A | G |
| Osa09LNT0430200.1 | 9 | 5841077 | A | G |
| Osa09LNT0430200.1 | 9 | 5841915 | A | G |
| Osa09LNT0430200.1 | 9 | 5842228 | T | A |
| Osa09LNT0430200.1 | 9 | 5842276 | C | T |
| Osa09LNT0430200.1 | 9 | 5842346 | G | A |
| Osa09LNT0430200.1 | 9 | 5842420 | A | T |
| Osa09LNT0430200.1 | 9 | 5843061 | G | A |
| Osa09LNT0430200.1 | 9 | 5843494 | A | C |
| Osa09LNT0430200.1 | 9 | 5843782 | G | A |
| Osa09LNT0430200.1 | 9 | 5835580 | A | G |
| Osa09LNT0430200.1 | 9 | 5837062 | T | A |
| Osa09LNT0430200.1 | 9 | 5837902 | A | G |
| Osa09LNT0430200.1 | 9 | 5838464 | A | G |
| Osa09LNT0430200.1 | 9 | 5838477 | A | G |
| Osa09LNT0430200.1 | 9 | 5839410 | A | G |
| Osa09LNT0430200.1 | 9 | 5839510 | A | T |
| Osa09LNT0430200.1 | 9 | 5839999 | A | T |
| Osa09LNT0430200.1 | 9 | 5840091 | T | C |
| Osa09LNT0430200.1 | 9 | 5840093 | A | G |
| Osa09LNT0430200.1 | 9 | 5840244 | T | C |
| Osa09LNT0430200.1 | 9 | 5840500 | A | G |
| Osa09LNT0430200.1 | 9 | 5838359 | C | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa09LNT0430200.1 | osa-miR5534a | Translation | 5.0 | 18.897 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR5534b | Translation | 4.5 | 18.897 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR5536 | Translation | 5.0 | 17.12 | 1 | 22 |
| Osa09LNT0430200.1 | osa-miR5541 | Translation | 4.5 | 17.741 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR5543 | Translation | 4.5 | 15.222 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR812q | Cleavage | 4.0 | 14.349 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR5799 | Translation | 5.0 | 13.932 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR5834 | Cleavage | 4.0 | 14.482 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR167a-3p | Cleavage | 5.0 | 15.894 | 1 | 22 |
| Osa09LNT0430200.1 | osa-miR167c-3p | Cleavage | 4.0 | 13.357 | 1 | 23 |
| Osa09LNT0430200.1 | osa-miR160f-3p | Translation | 4.5 | 23.156 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR416 | Translation | 4.0 | 10.476 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR435 | Translation | 4.5 | 19.088 | 1 | 20 |
| Osa09LNT0430200.1 | osa-miR530-3p | Cleavage | 4.5 | 15.961 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR1436 | Cleavage | 3.5 | 16.612 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR1428e-3p | Cleavage | 5.0 | 13.902 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR1874-3p | Translation | 4.5 | 15.513 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR1875 | Cleavage | 4.0 | 12.528 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR1875 | Translation | 4.5 | 10.325 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR2099-3p | Cleavage | 4.5 | 14.882 | 1 | 20 |
| Osa09LNT0430200.1 | osa-miR812o-5p | Translation | 4.0 | 13.509 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR5080 | Translation | 5.0 | 12.726 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR5146 | Cleavage | 5.0 | 9.195 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR5159 | Cleavage | 3.5 | 14.658 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR5340 | Translation | 3.5 | 16.037 | 1 | 23 |
| Osa09LNT0430200.1 | osa-miR5503 | Cleavage | 4.5 | 21.283 | 1 | 22 |
| Osa09LNT0430200.1 | osa-miR2275d | Cleavage | 4.5 | 21.95 | 1 | 22 |
| Osa09LNT0430200.1 | osa-miR5526 | Cleavage | 4.5 | 12.796 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR5528 | Translation | 5.0 | 13.932 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR812s | Translation | 3.0 | 13.932 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR812a | Cleavage | 2.0 | 13.928 | 1 | 22 |
| Osa09LNT0430200.1 | osa-miR812b | Cleavage | 2.0 | 13.928 | 1 | 22 |
| Osa09LNT0430200.1 | osa-miR812d | Cleavage | 2.0 | 13.928 | 1 | 22 |
| Osa09LNT0430200.1 | osa-miR812e | Cleavage | 2.0 | 13.928 | 1 | 22 |
| Osa09LNT0430200.1 | osa-miR1439 | Cleavage | 2.5 | 6.727 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR1436 | Cleavage | 4.0 | 10.752 | 1 | 21 |
| Osa09LNT0430200.1 | osa-miR812h | Translation | 5.0 | 13.932 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR812i | Translation | 5.0 | 13.932 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR812j | Translation | 5.0 | 13.932 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR812c | Cleavage | 2.0 | 13.928 | 1 | 22 |
| Osa09LNT0430200.1 | osa-miR812p | Translation | 5.0 | 13.928 | 1 | 24 |
| Osa09LNT0430200.1 | osa-miR812g | Translation | 5.0 | 13.932 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa09LNT0430200.1 | 9 | clr9 | Resistance or Tolerance | Cold tolerance | RM285 | RM434 |
| Osa09LNT0430200.1 | 9 | qPC9 | Physiological trait | Eating quality | RM4413 | RM1896 |
| Osa09LNT0430200.1 | 9 | qAC9 | Physiological trait | Eating quality | RM4413 | RM5122 |
| Osa09LNT0430200.1 | 9 | Sub-1(t) | Resistance or Tolerance | Submergency tolerance | C1232 | RZ698 |
| Osa09LNT0430200.1 | 9 | apd9 | Others | Others | CDO590 | G103 |
| Osa09LNT0430200.1 | 9 | nan | Morphological trait | Root | C711 | G103 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|---|---|---|---|---|---|---|
| Osa09LNT0430200.1 | osa-MIR812d | 83.333 | 144 | 12 | 153 | 8.87e-31 | 130 |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)