>Osa09LNT0430700.1

TGGGCCGTGCAGAAGGATGCTTCTGCTTTTAATCATGTATGATCAGCTGGCCTGATCACAAATAAGCACAAACAAAAAATTTGTGTTCTGCCTGTCAAACAAATGAGTTTGGTGCGTGTTTGTTTTTGAACTCCTCTTTCTTCATTTTGGTTCGTCTTGCTGCTTCAGTTGCATGACTTGGCTCCTCAAGCTATACTCTCGCATCTGCAAATTGTGAGCTTGATAGAGGAGATTCCCGCACTCCTCAATCGCAACTCTTTCACTAGCTATAACTTGGGCAAGCTTAGCAGCCACATCGTCAACTTCTTGAACCTTTGGTAGAAAATTTTTAACACAAGAAGACACTGGTTCCAGCAGTTGTACAGAAGAGTTGAGAACTTCTGTAATTTCCTCGCTATTTGCCCGAACATTCCCAATGACTGGTAGTCTAAGTGAAGAATTATACAGGGCTGATGTTAACCCGATAAGAGAGCTTGAATGATCCCCCTCAAGATCACACCATTGATCCAAGTGCGGTACCTGAGCATCAACAACAGAGCGCAATGTCTGCTCCCTCCTCATCCTCTCCACCTCCATCTTCTTCTCGGCGAC

Explanation	CPC Score
noncoding	-1.29572

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0430700.1	9	6369854	T	C
Osa09LNT0430700.1	9	6369832	A	G
Osa09LNT0430700.1	9	6369970	C	A
Osa09LNT0430700.1	9	6369395	G	C
Osa09LNT0430700.1	9	6368975	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0430700.1	osa-miR6246	Translation	4.5	12.858	1	23
Osa09LNT0430700.1	osa-miR171h	Cleavage	4.5	17.473	1	21
Osa09LNT0430700.1	osa-miR1847.1	Cleavage	4.5	23.486	1	21
Osa09LNT0430700.1	osa-miR1853-3p	Cleavage	4.0	15.817	1	22
Osa09LNT0430700.1	osa-miR2094-5p	Cleavage	5.0	20.149	1	21
Osa09LNT0430700.1	osa-miR2876-5p	Translation	4.0	15.621	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0430700.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0430700.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0430700.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0430700.1	9	Sub-1(t)	Resistance or Tolerance	Submergency tolerance	C1232	RZ698
Osa09LNT0430700.1	9	apd9	Others	Others	CDO590	G103
Osa09LNT0430700.1	9	nan	Morphological trait	Root	C711	G103

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus