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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0431000.1

GTTCCAGCTAAAAAAAAAGACATTATCTAAAATATAAAACATTGAGTTCGATCCAGGTATTTACAATTCGAAACATTGAGTTGTTCAACCACTGCCACACAACAAGCAATATGTGCCCAAGCAATATGTGCCGGTTGGGAACCTCACAAAGGTGCCGAATTTTCCAACCGGCACCACGAAGGCAGCACAGATTAGAAACACTCAAAACCAGCACCTTTGAGATATACGAATTGAAAAAAATAATAATAAAAATAAGAATAATAAAATTCAGCTCGGCTCAAATTGAACCGAGCCGATGCATCAAAGCAACCAAAAAAAAATCCAAAAATCTCAAAAAACAAATCCGCTGCTGGCACCACTGCCGCTGCACACTGTTGCATGCCGCCGCCACTCATGCTCCGCCCGCTGCCAGGACTCTGCGCCACCGTCGTCGCTGCCGAGACCACCGCGCCACCGCCATCGCCACTGGATCTTGACGACGTGAAGAGAGGCCAGCGATAACGCCCAACGATGATGAAGGGTGGTGCATTGACAACGCCATGATCAATGAGGCACTGACATGGCCGACGCAGTCCGTCGACACCCTTCATTGACCTTCCATGCCCGACGACGTGGAAAAGGGCGGCGTGGCGCGGCGAGATCTGGAT

Coding Potentia
Explanation CPC Score
noncoding -1.0175
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0431000.1 9 6775759 A G
Osa09LNT0431000.1 9 6775515 T C
Osa09LNT0431000.1 9 6775519 A G
Osa09LNT0431000.1 9 6775548 G A
Osa09LNT0431000.1 9 6775656 G A
Osa09LNT0431000.1 9 6776074 G A
Osa09LNT0431000.1 9 6776077 A G
Osa09LNT0431000.1 9 6776152 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0431000.1 osa-miR5805 Cleavage 5.0 15.462 1 24
Osa09LNT0431000.1 osa-miR5082 Cleavage 4.5 20.111 1 24
Osa09LNT0431000.1 osa-miR5082 Cleavage 4.5 20.077 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0431000.1 9 nan Resistance or Tolerance Drought tolerance R1164 R79
Osa09LNT0431000.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0431000.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0431000.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0431000.1 9 Sub-1(t) Resistance or Tolerance Submergency tolerance C1232 RZ698
Osa09LNT0431000.1 9 apd9 Others Others CDO590 G103
Osa09LNT0431000.1 9 Sub1 Resistance or Tolerance Submergency tolerance nan nan
Osa09LNT0431000.1 9 nan Morphological trait Root C711 G103
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus