>Osa09LNT0431100.1

TAACATTTTCTCCAATACGAGCATTCTTGTCAATTATTGCTTTTCTGATGTGTGCATTCTTTCCAATACCAATGGGAATGCCACCAGTCTCAGAAAGGGCTTTCTTGTCCGTCTCCGTCTGAACAAAAAGCACAATTAAGTTCCCACAACACCAATACACCATAATATAGTATAGTTTTGTTTTATTTTACCTCATAATAGTCTGCACCCATTAGCAGAGAGTCCTCTATCACTGCGCCTTCAGATATACAGGACCGGAGTCCAACCACAGAATGGTTGATTGATACTTACTCTAATAACACAACCTTCACCAATAACACTGTCTGTCACATCAGCATCAAGAACTTTTGATGGAGGCAAGTATCGAGGTTGCGTATAAATTGCGGCAGAACGGTCATAGAAGCTAAAATCTGGCACAGGTTTCTTGGTTATCCCCAAGTTGGCATTGTAGAATGCCTCTATAGTACCAATATCTTCCCAGTAACCATCATATAAGTAAGC

Explanation	CPC Score
noncoding	-1.31297

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0431100.1	9	7246804	G	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0431100.1	osa-miR1440b	Cleavage	5.0	17.656	1	21
Osa09LNT0431100.1	osa-miR2871a-3p	Cleavage	2.5	12.471	1	21
Osa09LNT0431100.1	osa-miR2871b	Cleavage	2.5	12.471	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0431100.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0431100.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0431100.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0431100.1	9	Sub-1(t)	Resistance or Tolerance	Submergency tolerance	C1232	RZ698
Osa09LNT0431100.1	9	apd9	Others	Others	CDO590	G103
Osa09LNT0431100.1	9	Sub1	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa09LNT0431100.1	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0431100.1	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus