>Osa09LNT0431400.1

CCTCTTCCCCAGCTCCTTTGTTAGGTTTTCTTCCAGTGAGCTCTTTTTGCTCATATTCAGATCTTCACTTATTTCCTAGTTGTTACTACTGCCTTTGAGTATTGACAGCTTCATCCTGCCAACTCAGCTCAATCTTCCTCTGAAGTTTCAGTCTTTGTTTCTGAATCTCTTCAGTGTTCAGAGGGGAAGTTCTGCCAAAAAATTTCTCTGGCCATCCATTTTCCAAGGGGAGATTCTGCCAAAATTTTCATCTCTGTCCATCAATATTCCTGGGGAGGTTCTGCCAAAATTTTCTCTGAAATCGGTTAATTTATAAGGGGAGGTTCTGCCGAAATTTTCGCTGGTCATCAATCTTCCCTTTGTTGACATACCCTGCATAAGTATATACAACAAACATATAACTTTTTGCAAGGTAAGAAGGAGTTTTTATCTGTTCTTGATGATAGACTCCTAGAGAAGTTGTCCTAGTTGTGTAGATGTTGTTGCTCATCATCCCTGAGCACCTCCTCTCTAGATTTATGACTGGCCCAGCCATAACCCAGCTTGTTCAGTCCTTCTCTGTTGTCTTCCTCTACTGGTTCTATGTCTTCTCAGTAAGCTCCCTCGTCCGGGTCGAGCCAGGGAACCCGGAGCTCCAGGTCGGAAGATGACCTGAACCTCCAGGCCCAGATGGAGAAGAAGAGGAAGAGGAGGAAGGAGTCGAACCGAGAGTCGGCTCGGAGGTCTAGGATGAGGAAGCAACAGC

Explanation	CPC Score
noncoding (weak)	-0.76289

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0431400.1	9	7871935	C	T
Osa09LNT0431400.1	9	7871706	T	C
Osa09LNT0431400.1	9	7871947	G	A
Osa09LNT0431400.1	9	7872272	C	T
Osa09LNT0431400.1	9	7872490	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0431400.1	osa-miR395v	Cleavage	4.5	17.394	1	21
Osa09LNT0431400.1	osa-miR395v	Cleavage	5.0	13.679	1	21
Osa09LNT0431400.1	osa-miR2870	Translation	4.5	12.809	1	21
Osa09LNT0431400.1	osa-miR2876-3p	Cleavage	5.0	19.338	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0431400.1	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79
Osa09LNT0431400.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0431400.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0431400.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0431400.1	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0431400.1	9	apd9	Others	Others	CDO590	G103

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus