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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0431800.1

GCCGCCGCCACCATCCACTCCCCCACCGTCCTCCGTCGCCTTCTCTCTGAATCTTGGCGGTGGCGGCGACCGAGTGCGCTCGAGCCGGCGGCGGCGGCTCGCATCCCCATTCCGTCCTCCGCCCCCTCCTCTCTGAATCTCGGCGGTGGCGGTGTCCGCGCGCGCTAGAGCCGGTGCCGGCGCCGGCGGCTCGCATCCCCACTCGCATTCCGTCCTTCGTCCCCCTCCTCTTTGAATCTCGGCGGCGACCACGCATGCTCAAGCCGCCGGCGGCGGCAGCGACCGCGCGCAGTCGAACCGGCGGTGGCGGCGGCGACCGTGCGCGCACTAGCTGGCGGCGGTGGCTAGCATCCCCCCTCGGTACTCCGTTCTAGGATCTGCAGGTTTGTCCACGGCGACGACGCCGCCGCTCTGGCGTGCGCTGCTATGGACGCGGCCACCGCCGAACAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCGGTGCCTCGGCCCTGCTGCTTCCCGGCTTACCATCCGCCCCCACCAAGTGCCTTAGCCTCTTGCTGCAGCAACAGCACAACGACAACCAAAGAGAAATGTGGGGATGGCAAAGTCAGGAATGTGATCTGCAGAAAGATTTGCTTACTGATCCATCTAGCTGTTTGTGGAGTGAAGCAAATCAGAATGCCAGTGATGCTTGGACCATGTTCGATTAGCAAACTCCATCTAGCTGCTTGTACATGTGTTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAACTTTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCTTTTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGATGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCTGATGATGATGATGAGAGAATGTAAATTGATGATCGGTAATTAATTTTGTTTAAATTATGGATG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0805255
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa09LNT0431800.1 DTM_#DNAt_MULE_japo_Os1428 Chr9 + 8211977 8217333 1696
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0431800.1 osa-miR5535 Cleavage 5.0 13.538 1 22
Osa09LNT0431800.1 osa-miR5539a Translation 5.0 24.935 1 22
Osa09LNT0431800.1 osa-miR5539b Translation 5.0 24.935 1 22
Osa09LNT0431800.1 osa-miR1858a Cleavage 3.5 21.026 1 21
Osa09LNT0431800.1 osa-miR1858b Cleavage 3.5 21.026 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0431800.1 9 nan Morphological trait Root C711 G103
Osa09LNT0431800.1 9 nan Resistance or Tolerance Drought tolerance R1164 R79
Osa09LNT0431800.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0431800.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0431800.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0431800.1 9 apd9 Others Others CDO590 G103
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus