>Osa09LNT0432800.1

ATCTCTCTCTCTCTCTGTGCCCTCTTCTTCCTAGCCGAATTCTGCTGGTCTCCATTGCGGCTACTGTTCTTGGGGTTGCCCTCTCTCTCTCCTTCCTTTGGTTTTGGGCGGTTTTCTTTTGCTGAAAAAAACTAGTTCTTGATTGGTTCTTGTCATCTTTGGGAGGACATTGCTCTGGGTGTGTGTCAAGATTGTGCTGGGAGCATAAAGCTGGGATCTTTGGCCAGATTGTAGAGGGCTTCTGGTTCTTGTCACTGGGGGTGCTTTAGAGCATTTCTTGGTGTCCATTACTGTTCTGGGTCATAGAGTTTCCAATCTTTGGCAATTACTCGGAGGAATTCTTGAGCTGTGTGCTACTGTTTCCTTTCCCTGATAAATCAACCAAGGGAAGGGAAGGCTGTATATTTTCCCTTTCTTGTTCTTGATCTTTGCAATAATTTTGATCATCTTGAAG

Explanation	CPC Score
noncoding	-1.15853

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0432800.1	osa-miR167a-5p	Cleavage	5.0	19.329	1	21
Osa09LNT0432800.1	osa-miR167b	Cleavage	5.0	19.329	1	21
Osa09LNT0432800.1	osa-miR167c-5p	Cleavage	5.0	19.329	1	21
Osa09LNT0432800.1	osa-miR167d-5p	Cleavage	5.0	19.329	1	21
Osa09LNT0432800.1	osa-miR167e-5p	Cleavage	5.0	19.329	1	21
Osa09LNT0432800.1	osa-miR167f	Cleavage	5.0	19.329	1	21
Osa09LNT0432800.1	osa-miR167g	Cleavage	5.0	19.329	1	21
Osa09LNT0432800.1	osa-miR167h-5p	Cleavage	5.0	19.329	1	21
Osa09LNT0432800.1	osa-miR167i-5p	Cleavage	5.0	19.329	1	21
Osa09LNT0432800.1	osa-miR167j	Cleavage	5.0	19.329	1	21
Osa09LNT0432800.1	osa-miR529b	Cleavage	4.0	15.154	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0432800.1	9	apd9	Others	Others	CDO590	G103
Osa09LNT0432800.1	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0432800.1	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79
Osa09LNT0432800.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0432800.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0432800.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus