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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0432900.1

TAAAAATCAATATTGCCATCCACCCTGATAATGATGCTATTGGTAGTTTTCTGAACATTGGACAAACAGAGAGTAGCATGAATAATATGATCAGTTGTGCTTGAATCTTCTCGCAAGGAGGCTAGATATATATCCTTTCTATTAACTACTGGGAGGGGTAATTCTCATCCTCATCCCATTACACATTCTTCCTAACAAATCCAAAGATTACTTTTATAAACACTCAGTAACGGAGTAGCATCTGAAAGCCCCAAAGCAAGTCACTGTATCTGTCGAGAATGCATGATTACAATCTGAGATATAAGGATTCTATATTTGGGACCAATTGATTGCACGTTATAATCTTAGTAGCTAGTATATATCTTAATTAGGTCGAGTCGTCGTTTTTCTCGCAAAATAGATCAAATTTGTTGATCCAAAAGGAGTAGATGACGCCAGGGATGTAGCCGCATATAGTAAGCAGCAAGCAAATCCAGAACTCCTTCTCGCAGTGGTGCCTTATGAAAACAGGAAGCGGAGGAAGAATGATGGTAACGATTATGTAGAATATGTATGCGCATCCCATGAAGCAACAAAGCACGCATGATGTACATAACCATGCAAAGATGTTCTGGTCGTCCATCATGAAGTGCCCCATCCTGTCTCAGATCAGCAACTCCTCGCTCACACTCGATACGATAACACCAGCTGACAAGCTAGAGCAAGAAATGGGCCCTGTATCTGTTGGCAATTTGGGTGTAAACAGTATCCCTATGTGCTTTGGGGATATAGCGCGATATGTGAGTACTAAGGACTTGTTATAATGACTAGCGGAGAGCCAG

Coding Potentia
Explanation CPC Score
noncoding -1.14363
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0432900.1 osa-miR1862a Cleavage 3.5 16.478 1 24
Osa09LNT0432900.1 osa-miR1862b Cleavage 3.5 16.478 1 24
Osa09LNT0432900.1 osa-miR1862c Cleavage 3.5 16.478 1 24
Osa09LNT0432900.1 osa-miR1862f Cleavage 4.0 16.478 1 20
Osa09LNT0432900.1 osa-miR1862g Cleavage 4.0 16.478 1 20
Osa09LNT0432900.1 osa-miR5486 Cleavage 5.0 17.107 1 21
Osa09LNT0432900.1 osa-miR5486 Translation 4.0 13.793 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0432900.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0432900.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0432900.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0432900.1 9 apd9 Others Others CDO590 G103
Osa09LNT0432900.1 9 nan Morphological trait Root C711 G103
Osa09LNT0432900.1 9 nan Resistance or Tolerance Drought tolerance R1164 R79
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus