>Osa09LNT0433100.1

AGTTAACCTGTCCTAAGAAAGGGTGGTAGGTAGTCCATGTCGCGAAGATCGGTGTTGGCTGTGAGCGCCATCAGGGCAACGACGACGGATCTCATGGTAGGCCTCATCCCGGGCTCCTCATGCGTGCAGGACTTTGCAAGGGACGCAATCGTGAGAGCCGAGTCGACGGGGTAGTCCCCTCGCAGGCTTGGATCGATCAGTTCATCAAGAGCTTCCGTGGGGTTTGGAGCGCTGAGGGCCTCCTCAAACCACTTTACTTCTTGATAACCTTAGCATAGATACACAAGAGCTCACAGAAGAGAAGAACAATGCCTACACTGCACAAGAAATACATATCAGAAAATAATGAAGGAAATCACAGTTGTAATTTTACCTGACAGTCGAAGAATGCTTACCCTGATTTCAGAGGGTGGTAACTTCCATTTGGATCTGGAGATAAATAACAGAGTAAAGGATGCTAGCATATATAGAATTATAGATTGACACCTAGAAGATTAATTGTTGACAACAGCTGTTTTTTAAGAGAAGAGATTAAGCAAATGACAGTGGTGAGCTTTTCTGAAGAATGACTGCAGTGAGTTGTGCTAACTAACTAATTATCAAGTATCAGTACAAAAAAGGTTGGCAATTCGACTTGCATGATACTCTCTCCAGTACCAACTATGTAGCAGCATAGACATGAGTACATGAGGCCTCAAACAACCATGATGCAGGATCAAATAGATTACCACTCCCGAAACATGAAAACTACTGCATACCATGGCACAACACAAAGTCGATCTGTGTATGTGAAATAGCATACGACAGGGGTTGAACTTTGTATAACCAAAACTCAGTTACTGCATTGCTTTAAATCAATCACAAATACAACCAAGCAAAATTGATAAATATGCTAAGAACATTCAAGCAGTAATCAAACTTCATCAATTTCCCCACTTCCTTTCACAAACTGCCTGCAAAAACCACTGTTATCCAAACCACACTTCACATTTTCACATTCTCAATTATCATCCAACAAAAACCTCTCACAAGTCACAACTCATAGTTTTACAAGCTCAAACAGTCAAAATCAAACTGAGAAACCAGTAGCACTCACCTTTCACCGGGATGAACACAATCCCCTTCCCGGAGACCCCTCCCATCCCGGGGTTGTACCTCCTGATCAGCTCCATCTCCGCCGGCGACGAGAACCCGTACTGCGCGGCCACCGATTCGAGCGTCTCCCCATCCCAGAGCGGGTATGTGAGGAACAGCCCGTACCGCGGCGAGACCCTCTCGTCGCCGCATGAGCAGTTGACGGTGACATTGACCCTTCCATCGCCGGGGATCCTGCCCTGGTGGCCTCCAGCCACGCGGCGGTGGTGAGGTTGGCGAAGTTCGCGGCGACGGCGTCGTAGGTGTCACCGCCGCCGCCGCGGGGGAGGGGGAGCGGGTAGGGGATGGCGCCGGCGAGGAAGGTGGAGGCGGGCGCGGCGGGGAGCCCGAGGCAGGAGCAGGGGAAGACGAACACGCGGTCGCCGGTGACGACATAGTCCGGGTTGGTGATGGCCGGGTTGTAGGGGAGCAGCGCTTGGTACCCGCCGCCGCCGATGGCGAAGATGGTGGCGATGAAGGTGAGGTTTGAACCCTCGGAGAAGTAGTAGGCGGCGATGGCCAGCGAGCAGCCGGCGCGGCAACCGTCTCCAGCCGCCGCAACCGCCGCCGCCGCACAGGCGCCGATGAGGAGGGCGGGGAGAGAGAGTATGAGGCACTGAGTGGACGCATCCGACTATGACCTGTACGACTCGGACACTAAAATTCACCTCAACATCATTGGGACTACTACTGCACTAAACTAGTTCGTCACCAACTCACACGATTCATCAACTAACTCAACCTCCAACACCATCAACTATAACTACAAAATCCTCGGACTCGAATCCAGCGGGGACCTCATCTGTGGTGGGTGGCATGCATTCTCTAACTACACAATCCTCGAACTCGAATCCAGCGGGGATCTCATCTGCGTGGTGGGTGGCAAGCATTCTCGGGGGAGGACGCACTGGGGCACCAGGCCATTCCAAGCTTCGAACGCCATCACATGTCGGGGTCTGGAGGTGCGGTGAAGTCGGCGGGGAGGGCTGCAACGTTCTGGACGTGTTGGCGCAGACGGGGCAGTCTCGCCTCCAC

Explanation	CPC Score
noncoding (weak)	-0.971904

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0433100.1	9	9514567	G	A
Osa09LNT0433100.1	9	9514711	T	C
Osa09LNT0433100.1	9	9515432	T	C
Osa09LNT0433100.1	9	9515755	T	C
Osa09LNT0433100.1	9	9516378	G	T
Osa09LNT0433100.1	9	9515386	G	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0433100.1	osa-miR1853-3p	Translation	5.0	8.135	1	22
Osa09LNT0433100.1	osa-miR1853-3p	Cleavage	5.0	1.192	1	22
Osa09LNT0433100.1	osa-miR2098-3p	Translation	3.5	3.339	1	20
Osa09LNT0433100.1	osa-miR2868	Cleavage	3.5	13.011	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0433100.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0433100.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0433100.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0433100.1	9	apd9	Others	Others	CDO590	G103
Osa09LNT0433100.1	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0433100.1	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus