>Osa09LNT0433600.2

CCCCTAATCGCTCACGCGCCGCCGCCCCTCCCCAATCGCGCCCCCCTCTCCAACCCTAATCTCTCCCTCTCACGCGGCGCCACCGCCGTCGCCGCCGCCCTCGACTGCCGCCGCTCCGCCGTTGTTGCATCCGTCGTCTCGCCGCCACCGATCTCAATCGCGTGATTTCCTTTTCTTATCCCGAAATCGTGCAACCCTCTCACCCTAACCCTAATCTTGTCCCCGCCGACCGACGCGCCGCCCCTCCCCGCTCGAGTCCATGCCGCCGCAAGTTCGCCGTCGCAGGCCGCGTCACCCGGATCAGCGTTGACGTCGCACGCCTTCCTCCTCACATCGCCCGGCATACGCTCGTCCTCGGTCATATCGGCGCCACCGCCGTCGCCGTCACACGCAGTCCTCCCCGTCCACCTCGCCGGCCTCGCGCCCTCGCCGCTCCCAACCTCGCCCACGAGATCCTACTTTGATATGGTTGAGACTTCATAAATTAGTACACTTCCTCGATGACCCTTCAATGAATGCCTAAATACTAGAGCTGCCAGAATGGAAAATGCCTGAACATTGCTCTGAAGATGAGTACATCTTTTGCAAGTCTTGATCTGTGCACCTCTTCAGCTGGTTGTCAGCATGAAAAATTTATGATTCTGACATATGTCTGTGAATATGTTTGTAACAATGAATTCTAAAAACATATATCTCTGAATACGTTTGTAAATTTAGTTGGATTTTGTGAAGTTTTCAGTGAGCTTTGGAATGATTATGAGATAGCTAAAGATGACTATTGCTTGTATGGACCAACATGGTCTTGTATCATTGACTTGGTTGTAATATATTTGGAATGTGTTAATAACTGTGAACTGATGTATTGTATTCAAATAATTGAAGCCTTGAATTGGTCTCAACTTGTAGATA

Explanation	CPC Score
noncoding	-1.23702

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa09LNT0433600.2	DTM_#DNAt_MULE_japo_Os0037	Chr9	+	10224089	10229975	2842

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0433600.2	osa-miR5832	Cleavage	4.0	15.821	1	21
Osa09LNT0433600.2	osa-miR5485	Cleavage	4.5	19.402	1	21
Osa09LNT0433600.2	osa-miR5509	Translation	5.0	14.695	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0433600.2	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0433600.2	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0433600.2	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0433600.2	9	apd9	Others	Others	CDO590	G103
Osa09LNT0433600.2	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0433600.2	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79
Osa09LNT0433600.2	9	nan	Morphological trait	Shoot/Seedling	RG553	RZ206

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus