>Osa09LNT0433900.2

AACATATTTAGAGTGCGATTAAAATTTTATTATTTATTGTATCAATAATATGAGCCCTTGCAACGCACGGGTTAGCGACTAGTATATATATGACGCGTACGTAAGCTCCATCGATCAGATGAGCAGAGATACCCAAACCATTCCCAGCAAAATGCCTGTGCTGCTAATTGCAGTTACAGCAGCAGCAGGAGGAGGAGCATCAGAACGTGGTGATGAGTAGCCAGTAGTCTTGGGCACGGCAGCCGCAGCCGCAGCCGCAGCCGCAGCCGGGAGAGGCGGCTCAACGACGTCCGATGGTTTGAGCACAAGTGCTGGTGCCCGAGCCGGCCGCCTGGCTTTGTCTTGGAGTGTTTGCACGAGACCGCCGATTTCGACAGCCTTCATGGACCGAGGCTTGCCATCTCCCAGACCCGTACAAGAGTTCATTTTGTATCTTCTGACTGTCTTGGGGAAATCAGTTATGATGCCATCAATATGAACCAGAGAAGAACGTAGTTATTGATTTCCACCGTTGTTTCATCTGAGAAGAAATCCCAGGGTGATGATACAAACTCATTCCGGAATACCTGGGCATACACAGCTAACCGCCCCGCAGACTGCAGTTCTTTCACGAGATTGGTTTTCCTTACAATGAAACCACTGCTCTCAACAAACACGGATTTCCTCGATGGTGATCATGATGCCAGACAACTCCTTGTCCTTCGCATATGTCAGAAATTCAGATAACTTCAAAAACTTGCCATGATTTGTGTACCTTGGATTCCGTAACATAACATAATCACTCAGCGGGGAAGATATTTTGGGTCTCAAAATGTTGATGTCATCCCAAGTGAGGTTAAATGTGAATATTCCCTTTTTTGACTGAATTTCTGGAATGACAGAAAGAAGTGAACAGAACTTTGATTGCTGGACATCTGTAGTAGCAAGCAGGTCAATGGAACTCATGCATATAGGAATTCCATCTTTGGTCATTTGAATGGAACAGTCAATAACATCGGCACCATCCCTAACTGCATTCTCATAGGCCAGATCCGTACAACCCGGATAATCTCCACTACCACCATTATGTGAGATAATTAATGGATTCCCGTGATCCGTTTTCCTACTTGTGTTCAAATTACTGAAACAATCAATAGCCTCTGATGCAGTAAGTGGGAAATCTGTTAATACACCATCAACACTAAAGCCACCGTCGCTGACAAATGACAGATATTCCCCCAAAGGATCATAACTGTAGTTGTAGGGAAAAATTCCATCGTTTGAAAAATCAGACGCATATATTTCTAAACCTGCATTGTGAGCTTCTTGGACAATCTGTGTGTGAAGCTGAATATAATTATCACTTGTTACTGGCCATATATAGTTTTTGGGAACCATTATACCTGAAGCAATTGTCTTAATAAATGTCAAGTTACTCAACATATAGTTATATGTTTTATTTGTTGAAGGATCAGACAGGGCTTTATCAAGAAAGCAGAACACTAGATTCACTTCACGATTAATGCCTCCCGATAAACTTTGCAGGAAACCTAGTTCAGGTGATGAGATGTACTTCACAGAGCCAAGCTTCTGTATTGAAAGAATGTAATTTGTCATGTTCAAACCATGCTCTCTGTAGAAAATGTCATGCTCGACATTCAACCAAGTAGAAGATGGTTTGATCAAGGATATGAAGCCGGTGACAGAAAGGATGTCGAAGTTGGAGTCGAACCTCGGGGTACGGGAATAAATTGATTGTGTTACTGTCCAATGGTGGACAGTGAGTACAAGACAATAATTCCAGATGCTCAATACAACTAAAAAGTGTCAAAGAACCAAGAAAACAAAAGGCACTAGGATAACATCCATTTTTGGTCGCTCTAGCCGGCCGGCAAAAGTAACGTTTCTCAGCGAAGCCATGTTATAGTCCACAGGTAACCATCCGGTTTTCTGTGCACCATTGATTAGATATGCCTTCATCCCCTCTGGATAAATTTCAGTGATATCGGTGCAGTTCTGCATAAGTAAATCTCGGAGGCAAATACCAACGCCATCTTTCGTCAGTTGCACGTCACACCACAAGCTTATGTGGAGCGAGGAGGCAAAAGCGAAGGCATATTCACTGGAATCAGGAAAAACTCCCGAAAATCCACCTTTAGCAATAACAAGAGGAGCATTACCGTTCAAGGTTTTGAAGGTGGTTGGCGCCGGGGGGAGCTCCTCCGCGGCAACGGCGACGGTGACGGCGACGATGGTTGAGAGTAGCAGGAGGCAGAAGCAGTAGGACCGCACCATGGGGAGGGAGCCGGTAATCCTCGACAACATCTCCTCCAAGGGCCAAGGCTCGATCGGAGAAAGAACAGCACGCACGCACGCACTTTGTTTGGCTGTAAAGAGGCGCA

Explanation	CPC Score
noncoding	-1.25283

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0433900.2	osa-miR426	Cleavage	4.0	16.141	1	21
Osa09LNT0433900.2	osa-miR1861c	Translation	4.0	17.866	1	22
Osa09LNT0433900.2	osa-miR1861e	Cleavage	4.0	17.866	1	22
Osa09LNT0433900.2	osa-miR1861e	Translation	4.0	22.889	1	22
Osa09LNT0433900.2	osa-miR1861g	Cleavage	3.5	17.866	1	22
Osa09LNT0433900.2	osa-miR1861k	Cleavage	4.0	17.866	1	22
Osa09LNT0433900.2	osa-miR1861k	Translation	4.0	22.889	1	22
Osa09LNT0433900.2	osa-miR1861m	Cleavage	4.0	17.866	1	22
Osa09LNT0433900.2	osa-miR1861m	Translation	4.0	22.889	1	22
Osa09LNT0433900.2	osa-miR812f	Cleavage	4.0	15.702	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0433900.2	9	apd9	Others	Others	CDO590	G103
Osa09LNT0433900.2	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0433900.2	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79
Osa09LNT0433900.2	9	nan	Morphological trait	Shoot/Seedling	RG553	RZ206
Osa09LNT0433900.2	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0433900.2	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0433900.2	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus