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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa09LNT0434200.1

GGCCTCCACACTTCTCCACTATGCTCTCGGCATGACACTTGACTTGCACGTTATTGGTTATTCTAATACCCGCATTTGATTCAAAGAGACTCCATGCTTCATTAAACTTCAACCTTTGCAACACAATCATCTGGCAATGCCCGTCCATACCATAACAAACTTGTTGCAAACGTGATGTTATTACTATCATCTGCCTGTTTTGAGGGCCCAATTGCCGACCACCTTGCGGTATGCCGACCTTCACCAGGTCTAGTGTTTGCCAAAGATCATCTATCAGAAGTAGGAAGCTCCTTTCCTTCAAGAAGTTATAAAGGGATGCAGACCTAAATGTAGCGTCCTTGTTCTGTGTCAGCATAATGCCAAGTTGGGATGCGATGTTCTGCAGAACTGTCTCCAGATTTTGCTGCTGACTGACCTCCACATAGATGACATGATCGAATTCGTGTGTTT

Coding Potentia
Explanation CPC Score
noncoding -1.30858
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0434200.1 9 10807601 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0434200.1 osa-miR5536 Cleavage 4.5 10.737 1 22
Osa09LNT0434200.1 osa-miR168b Translation 4.0 21.21 1 21
Osa09LNT0434200.1 osa-miR1849 Cleavage 3.5 21.857 1 21
Osa09LNT0434200.1 osa-miR827 Translation 5.0 17.237 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0434200.1 9 nan Morphological trait Shoot/Seedling RG553 RZ206
Osa09LNT0434200.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0434200.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0434200.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0434200.1 9 apd9 Others Others CDO590 G103
Osa09LNT0434200.1 9 nan Morphological trait Root C711 G103
Osa09LNT0434200.1 9 nan Resistance or Tolerance Drought tolerance R1164 R79
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus