\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0434300.1

ACTGAAAAGGCCTGAAACTATTGCCCATCGAACAGAGTAAACCTGAAATTCAGTAACCTCATAATTTTCACAAGTTAGTTCAGCTAGTCCTCAGTTCACATACTCTATTCTGTAGCTCATTGAACAATGCTAAAGATTCTGCCCATAGCTTCTTGGCCACTTCAACGTTGTATGACAACTGAGAAGACGTTATGGTCCTTCCTTTCCCTCCAAAGAAATACTTTCCAGATGAGTCAGGTGGTGCCAAAGCGGCATCAAGGACAGCATCAACTCCCGTATCAGGTTGTTGTAGGAGATTCAGGAGGCGCAGAACAGAAAGCGCAAGCCAAGAAAGACATGGAGGAAGCTCCCGCATTATGCCTGTCTGTACTACACCTGGATCCGCAGCCATGACGGAGACACCAGAAGATAAGTGAAGTTGTCGATGAAGCTCGTATGAGAACATCAGTAAACAAAATTTGGTATACTCATAAGTAGAAGCTAAGAGATAGCTTCTCCTCGCTGGCCAATGACCAAACCTTACTCCGCTCAATCCTTTCTCAGACAAGTTAATTTCTGACACACATCTGTGTGTGAAAGACGTTAGATTAACCACCCGAGAAGGTGTTGAGCTGTTCTTGAGCAATGGTAACAGAATGTTGGTCAGGACAAATGGACCAATGTAGTTTGCCTGAATCATTTCATCAAGACCGTCCTCTGTAATTCGATATGACTTTGCTAGGATCCCAGCGTTATTGACCAAAAGCTGAATAGAGTGCTCCATATTTGAGTCCTTGATCCACTGATTCAGTGAAGTTTCAAACTTCTTTATTGACTTGTAGGATGACAAGTCGATTTGAAATGCTTCAAGATGGGCATCAGGTTGTTGATCCCGAATTTGTTGAACAGTCTGTTTTGCACACATCACCACAATGATGACAATGGGTAAATGATAAGATAAGACATCTAGCTAAAAGCTCCAAATAATACCTCAGATAACAATTGTGAAGAACGCCCAGCTGACACAAAATAGAATGCATATAGTGTTTTAGTCCAATAATACCAAGCGACCAACAAGGTTGAATCAATTCAACAACAAAATCAAGGAATACTTTCTACTCCAAAACTATAGCAATTGGCAAGTAGGAAACAAG

Coding Potentia
Explanation CPC Score
noncoding -1.06018
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0434300.1 9 10849837 T C
Osa09LNT0434300.1 9 10849896 C T
Osa09LNT0434300.1 9 10850087 A C
Osa09LNT0434300.1 9 10850262 A C
Osa09LNT0434300.1 9 10850882 A G
Osa09LNT0434300.1 9 10851188 A T
Osa09LNT0434300.1 9 10851270 A T
Osa09LNT0434300.1 9 10851557 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0434300.1 osa-miR396c-3p Cleavage 4.0 15.381 1 21
Osa09LNT0434300.1 osa-miR1855 Cleavage 5.0 15.526 1 21
Osa09LNT0434300.1 osa-miR5152-5p Cleavage 5.0 23.962 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0434300.1 9 apd9 Others Others CDO590 G103
Osa09LNT0434300.1 9 nan Morphological trait Root C711 G103
Osa09LNT0434300.1 9 nan Resistance or Tolerance Drought tolerance R1164 R79
Osa09LNT0434300.1 9 nan Morphological trait Shoot/Seedling RG553 RZ206
Osa09LNT0434300.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0434300.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0434300.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus