\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0434700.2

ACATCAATATATCCATAAGGATGATTTATGCCTTTAAACATGGATGTTACAATATTCAAATCCTCTTTAAACATGGCTGTTACAAGATTCAAATCCACTTGATGGCTGCTTTTGATGAGATCAAATAATGGCCAAATAATGGCCTTTGTAACATATCCCACTATATGTAGAATCCCTAGCACAAGGTCGGAGTTTCTAAATATCCACTAAAAGGCTCCGAAAGTTTCAGATAAGGTAATAATGGTTAAGAAACTTTGGATAAGGCCTCATGGAAAACATTGAACACCACTTGAACAATTCATGTGCCTCAATGACTCTAATGTTGCATGGCACAACAATATTTGGAGTTTCATGTATACAGAGTCCAGAGCTTCAACTGTTTAACAACATCCTTTGCAGATGAGCCAGAAACTTCAATCCATGTCATTATCTTGTATCACTGCCACCAGCTTCCTTGTAGAGTTTGTGTTCTCCAATATATTGGATGACTTCATCACAGATTAGATACTTTATTGATAGGCATCTTTTTATGCATTCTCTTACTCTAGACGAACTTATTTGGTTTGGAACAATCTCATCAACTGAAATGATATTGTCCCTGCATTCGCTCAGTGTCTCGCTGCTGGATATTATATATTTTCTCAACATCTTTTCCTTCTCTACGTATGCAAATAACACCAAAGTCCTTGCATATGGTCCTGATCTGATCAGGAATCCACACTCCTGGGATGCTGAATGATTCGAGCAGGTCAGAACCGCATAAAAGCATTACCTTGAGACTACCTCCATCAGCTAAACCATCCTTGCACAAAGCGTTCCGAATTCTTGAAAGAACAGTCAAGGTGCGTTGGTAACCTTTCTGCATTGCCTCCCATCGATCACCCATCACAAAAGATGAGCTTTCACATGCTAGTTCGCACAAGCGAATTCGGTGGGCTGCAGATAAGAGACCCTCCTTCTTGTAAGCGTCGTTCACTGGAGACATGTAACCACCCAATACACAATACCCTCGCTGCTGCAACTCATCCTTTGCCAGTTCGAACATTCGGAGATGCATGTAGGTGGGAGGATTGAAGCTCCCGGTGGCCACGAGCACAGCCACACCTTGCTCTCCTCCCTCCCTGCCCGGATCCACGGCGAGCTTCTCCGTGGGGAGAGGCAATTCCACCTCCTCCTCCATGGCTGCCCCTCAGTATCTGCGAGGATTATCCTCCTAAGATTCTCCACTTCCGCCCTCCGACGGTCCAGGGTCCTCACCTCCTCTGATCCTCTCAGTATTCCGTGGCCTCCTTGGGTCGCCGGAGCACGCGGCCGAGCTTTGCCGGAACTGCGCCGCCGGCGATAGGGC

Coding Potentia
Explanation CPC Score
noncoding -1.17307
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0434700.2 9 10928824 T A
Osa09LNT0434700.2 9 10928826 G C
Osa09LNT0434700.2 9 10928649 A T
Osa09LNT0434700.2 9 10929619 G A
Osa09LNT0434700.2 9 10929694 C T
Osa09LNT0434700.2 9 10930129 A G
Osa09LNT0434700.2 9 10930177 A C
Osa09LNT0434700.2 9 10930182 G A
Osa09LNT0434700.2 9 10930321 T C
Osa09LNT0434700.2 9 10930361 T C
Osa09LNT0434700.2 9 10930439 T C
Osa09LNT0434700.2 9 10930507 A G
Osa09LNT0434700.2 9 10930554 G T
Osa09LNT0434700.2 9 10930560 C T
Osa09LNT0434700.2 9 10930671 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0434700.2 osa-miR169e Cleavage 5.0 12.933 1 21
Osa09LNT0434700.2 osa-miR169f.1 Cleavage 5.0 12.933 1 21
Osa09LNT0434700.2 osa-miR169h Cleavage 5.0 12.933 1 21
Osa09LNT0434700.2 osa-miR169i-5p.1 Cleavage 5.0 12.933 1 21
Osa09LNT0434700.2 osa-miR408-5p Translation 5.0 20.028 1 21
Osa09LNT0434700.2 osa-miR169d Cleavage 5.0 12.933 1 21
Osa09LNT0434700.2 osa-miR169g Cleavage 5.0 12.933 1 21
Osa09LNT0434700.2 osa-miR169j Cleavage 5.0 12.933 1 21
Osa09LNT0434700.2 osa-miR169k Cleavage 5.0 12.933 1 21
Osa09LNT0434700.2 osa-miR169l Cleavage 5.0 12.933 1 21
Osa09LNT0434700.2 osa-miR169r-5p Cleavage 5.0 12.933 1 21
Osa09LNT0434700.2 osa-miR1428b Translation 2.5 13.819 1 21
Osa09LNT0434700.2 osa-miR1428c Translation 2.5 13.819 1 21
Osa09LNT0434700.2 osa-miR1428e-3p Translation 2.5 13.819 1 21
Osa09LNT0434700.2 osa-miR169m Cleavage 5.0 12.933 1 21
Osa09LNT0434700.2 osa-miR1428d Translation 2.5 13.819 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0434700.2 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0434700.2 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0434700.2 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0434700.2 9 apd9 Others Others CDO590 G103
Osa09LNT0434700.2 9 nan Morphological trait Root C711 G103
Osa09LNT0434700.2 9 nan Resistance or Tolerance Drought tolerance R1164 R79
Osa09LNT0434700.2 9 nan Morphological trait Shoot/Seedling RG553 RZ206
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus