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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa09LNT0434800.1

TGTAAGTCACATAAAACAACTTTCTATGTGCTCATTTGGCAACAGCCAAATAAATTTCTCTTCATATTACTTACACACTCAACCAGCATCTTCATTTTCCATTCTCCAAATCTTCTAGATCCCATATGTCAATGTCTCCTCCCCTGTTCTTCTCTCCGTCATGTGTCTACCTCTATTTCTCTCTTGTGTGATCCATGACATCATGGGCTATGACGGAGGTAGGCGGACACTACTACAGAAAAGCCCAAAGGCGCCAGTTCTAAAGGTCCTATCTTATAAACCGATTTCAGGGTTACAACCCTGACTCCTCATTGGGCCACGTAGCACCACGCCCAGAGCTCCAGCCGGATTCTCGGCCGGAGAACGTGCCACGTATTCCCAACCATCCTGCAGCCGTCCGATAATATATCAATGGTGAAAAAACCTTCAACGGATCCTTCACAAAATGTGCAATCTCATCTAGAACAGTCGGGATTAGAGGGGAAAAAAATTAAAAAAAAAGAATCCAAGCAAAAGAAATAAAAACATCAAGAACAATAGATTCCCCTTGCTTGATCACCATGCCGTCACCGAGTATGGACTATGGAGAATCCGACAAGGATAGAGGAAAGGACGGCAGGATCTTTGGCCCGGATCCAGCGAACACCACCCTCGCCACCTCTCAACAGCTATCCCCTGACTCGATCCACCGCCAGATCTGGGCCAACGTGGCTGAAGGAAAAGCTGGTGAGGAGAAAGAAAGAGGAAGGGAGGGAATGAACGATGCCGGGCCACCGAGCACCGCTGCCTGATCCTCCACCATCGCTGAATCAAGTTCGAGCTATTAGCACAAGCTAAGCAAGCGATAGGGAGAGAGAGCAGCAGCCATGGCCCATGGCGATTTTTACGGCGAGCGAAGGAACTGAGAGAAAAAAAGAGTGGGCAAGGGAAGAGATAAAAA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.91103
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0434800.1 9 11139671 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0434800.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0434800.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0434800.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0434800.1 9 apd9 Others Others CDO590 G103
Osa09LNT0434800.1 9 nan Morphological trait Root C711 G103
Osa09LNT0434800.1 9 nan Resistance or Tolerance Drought tolerance R1164 R79
Osa09LNT0434800.1 9 nan Morphological trait Shoot/Seedling RG553 RZ206
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus