>Osa09LNT0434900.1

GTGTGATGATCCGCCATAGCTAAATTTTTATGCTGGGTCCGCCACTGCTTGTATCTAGCATCCATATGAGGAACTTTGACTTCGTTCTTCATACAAAAAGAGGTGACTTCTTTTTAAAAATTCTCCCACCCATCGTCTTGCCGCAACATCTCCAATTGCATCTTTGTCAAAATAATGAGCTCAACCGCATTCACAATATCTTGCTCCCTCCTTTGCAAAGTTATGTTTAAGTCATCTGTGTATCCAAGAATAGTGTTCAATAAACGTGCCATGAAAACAAACTCAAATGACACAAATGATCAAAATGCAATTTGAACTTTCATAGTTTCCGCGCTTTGTGAACGACCTTTTCCAACTTGTAATAGGACCTTCCGGATTGAGCGATACAAAATAAGAATATGTTGCACTGTTTTATAGTGAGATCTCCAATGTGTATCTCCTGGCCTACCTAAACCCATCTCTTGATTCAGACCCTGCCCACTTTCAATTTCACCAAATTCCAAAGCTTCTACAATCTCTTGAGCTTGAGCAACTCGAAGCATTTCATGTTTCTTACAAGAAATCCCAATAGTAATCAACAAATATCCAAGTTGCTCAAAAAACCAAACACAGTCACCATTCTCCCTAGCAACAGCCACAAGAGTTAACTATAGTTGATGTGCAAAACAATGAACATAATAAGCAGAAGGAGATTCATTCATAATCAGCTTCTTTAGACCATTAACCTCACCCTTCATGTTACTAGCCCCATCATATCCTTGACCATGAACTTTAGACAAGCTAAATGATTGTTGCATCTCTACGTATCAAGGCTGTAGTATTCTCAACATGCACAACACCAGGAAAGCGCTCAACAACCCTCCCTTTCTTGTCAATATAACACAAGCAAAGTGCCAACTGCTCATTTTGATACACATCGCTAGACTCATCAGCAAGAATTAAAAAAAACTCATCCCCAAGATCTTCCATGAGAAGTTTAGTAGTTTCTCTAGCACAACATCCAATAAGTTATTTTTGTATCTTAGGGGATGTCATTTTACAATTCTTTGGAGCATTCTTTAGAACAACCTCGTTGACCTCTTTGAAATTTCTAGCCAACCAATTTAGAAGCTCAAGAAAATTTCCTCTATTGAGTGATTCTTCACTTTCATTATGCCCACGACAAGCCAACCCTTGCCGTAAAAGAAATCTCAAGCACTTAAGTGAGTAAGTTAAGCGGGCCTTATAAACAACCTTGTCATGTTTGCTTCTCTTCCTTAAATTCTCACCAATTGTTGTATTAGGTCTAATGATCGACATATTATATTTCTCTTGAGCTAGATTATGTGCACTACTAACAGAACCAACATGCTTATCAAATCTATCCAAATGGTTTCATTGTCTAAAGCCCTCATTCACATAACTATCCCCACCAACATAATTAGTTCTATCTTTGAACAAGTAGCAAACAAAACAGAATGCAACATCCTTTTCCTCGCTATATTCAAGCCAACTATACTTATCAAACCAGCTACTTATGAAACGACGTTTACCTCCACAATTTCTTTGAGGAAATTGCTCTAGTGGTGGTCGACAAGGCCCAAGTGCAATATACTTCATCCTCACTGCATCTTGCTGATTCACACTATAATCTGAGATGGCAATCCTCTTTCCAGGATCATGTGGTAGAAAACCAACATCCTCATCAACATCTTCTAGCCAATCTTCCTCTTTAGATTCTGAAATTGCAACATGAGGTTTGGATATTTCTATGTTGCCATCTATATCTTGAGGTCTTGATACTTCTATACTTTCATAGGGCACATGAGTTTCTGTTTCTGCAAATCCAACTTCACATGCTCTACTACACCCAATCTTCTCAGTTGCAGGTGCATGTGTAGTAGGTTCAGTGTCTTTCCTCACAACTGAATGCTCAGAAATATTATTGCTGTCAACTATAGGCTTTAGTTTCTTTTCAGCTCTACCCCACATTGATTTCAAATCCACAAATGTCTTCTTCTCTGAAGGCTCTACCACCTTCTTTTCCATGGCTGTCGGCGTTGGCCTCGGTTCTTCTCCTTCCTCAGCATTCTCCTGCTGCACTTGCTTCCCCGGATGCGGCACCAGTGGCAGCAAGAGAGGTGCTGGCGGCAAGGGTGCCAGGGCCGGGTTAGGGTTGGGCGTGAGGGAAGCGGCGAGAGAAGGGGCAAGAGGAGGAGCCGAGTCGGAGAAGCCGTCCTGCCGTGGAGGTGGAGCATCGCAAGAGTTCCGCGGCGGCGCGGTGCACTGAGGCGCCGTTCCCTGCTAACCGCGAGTTGCTCGGCCGCCGCCGCCGCCGCTCCTCATGGCCTCTTCCTTGTGCTTT

Explanation	CPC Score
noncoding (weak)	-0.839182

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0434900.1	9	11443454	G	C
Osa09LNT0434900.1	9	11443531	G	C
Osa09LNT0434900.1	9	11443570	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0434900.1	osa-miR5794	Cleavage	5.0	12.936	1	21
Osa09LNT0434900.1	osa-miR5143b	Cleavage	5.0	11.324	1	24
Osa09LNT0434900.1	osa-miR5819	Cleavage	5.0	21.993	1	21
Osa09LNT0434900.1	osa-miR319a-3p.2-3p	Cleavage	4.5	13.063	1	20
Osa09LNT0434900.1	osa-miR319b	Cleavage	4.5	13.063	1	20
Osa09LNT0434900.1	osa-miR530-5p	Cleavage	3.5	21.538	1	20
Osa09LNT0434900.1	osa-miR1852	Translation	4.5	21.432	1	21
Osa09LNT0434900.1	osa-miR395x	Cleavage	3.5	20.733	1	21
Osa09LNT0434900.1	osa-miR5143a	Cleavage	5.0	11.324	1	24
Osa09LNT0434900.1	osa-miR5161	Translation	5.0	12.659	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0434900.1	9	qLG-9	Physiological trait	Germination/dormancy	G103	R1751
Osa09LNT0434900.1	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79
Osa09LNT0434900.1	9	nan	Morphological trait	Shoot/Seedling	RG553	RZ206
Osa09LNT0434900.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0434900.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0434900.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus