>Osa09LNT0435000.1

ATTTCTATAAAGATATTCAATCTAATTGTCTCCTAATCAACCACTGGCAATAATTTTTGGGGCATACTTTTGACTATGGTGATAAAATGATTATCCTCACCTGCTGCTTTGCCACATGTACTTGAATACTCTGCTGCTCTCCTTCAGATGTGTTCATCACATCAGGGCAAAAGAAACCAGATGGCAGCCGGGCTGATGTGGCGATGATGGCGGTATTCAACAAGTCAATATATCCTTCAATGCAGGGAAGGAGGTTATGTGGGTGGGAAGCAACTGTTCGAACTGATCTGAAGTCGCAAATCCTTGTTGTTGGTGGCTCGCCTCCAGGGACTGCAGTGTGGATGTGGTTCGGCTGTCCTCGCTGTGGATCGGCGGTCGGCAGCGACCGCGGAGGAGATAGTCGGCGTGGAGTAGATCGGCGATGCGGGCGGCGGAGGCTGTCGGCAGCGCCCGCAGAGGAGGTTGTCGCTGGCTTCCTTGGCTGTCCTCGATGTGGATGTGGATCGGCGGTCAGCAGCGCCCGCGGAGGAGAAAGCCGGCGGTCGTAGATGTGGATCGACGATTGGCGTGAGGGACGAGGCAGCGTAGCGGTTGGCGTGGGGTCGGGGCGTCGGCGTGAGTCGCGGCGGCGTCCGGGATCGGGCGAGGCGAGGCGACGGCGGCGGCGTCTGGGAGCGGCGGCGTCGATCTGGAGGCGGTCGGCTGGGAGGGGCGCCGGCGGCAAAGGCAGGGCGTCGGAATCGACGGCGCCGGCGGCTGCGCTGCAGTTGGCGTGAGAAGAACGGAGCGAGGAGGTTGGGCGAGGGGAGGCGGAGCGATCTGGGCGAGCGGC

Explanation	CPC Score
noncoding (weak)	-0.372515

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0435000.1	osa-miR6254	Translation	4.5	9.84	1	21
Osa09LNT0435000.1	osa-miR408-3p	Cleavage	4.0	24.795	1	21
Osa09LNT0435000.1	osa-miR415	Translation	5.0	18.388	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0435000.1	9	qLG-9	Physiological trait	Germination/dormancy	G103	R1751
Osa09LNT0435000.1	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79
Osa09LNT0435000.1	9	nan	Morphological trait	Shoot/Seedling	RG553	RZ206
Osa09LNT0435000.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0435000.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0435000.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus