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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0435800.1

CCTTCCCAAAAAATCGCTAAGTCCCTCTCTCTCACCTCTCTGGCTCTCCCCTCTCCTCTCCATCCCTCTCCCCGGCGTGCACGGATCTGGCCAGATGCTACGGTCGTAGGGCGGTGGCGGCGACGGTTACCGGCGGTGGCGATGGCGTTGGCGGCTGCGGCTCCAGGCAGTGGCGGCGCACCCCAGCTCGGTCCCCTCCCTAGATCCGGCCGGAGGGAGGGGGAGGGCGGTGGCGGTGACGGCTACCGGTGCTGGTGGTGGCGTTGGCGGCTACGGCTCCAGGCAATGGCGGCGCACCCTGGCTCGGTCCCCTCCCTAGATCTGGCCTGAGGGAGGGGGAGGGCGGTGGCAGCAGCGGCTATAGACGGTGGCGCACCCCGGTGCGGTTCCCCTCCTCTCCCCAGATCCGGGTGGCGTCGGCTGCTCCCCTCCGGATCTAGCGCGGTGGCAGCGGCCCTCCCCTCCGGCTTTGGCGGGCGGCAGCTCCTCCCTTCCGGTGACGACTGTGTCTATGGATTTGTTTTGTTTGTGAATCATGTTGCCTCTATGTGAATTTGCGATGCTTCTGTGAATTTGATTTGGTTTGATTGGATTGGACGGAGAATAGGAAGTGGAATATTGGATTGGATTGGGAATAGGAAGGTGTGGCTGCTGCACTTTTTTTTTAGCGCTGAAAAATCTCTTCGCGGGCGGGCTAGTTGCCCGCTTAGGAAAATCACGATTTTTGCAGGCCTTGAGGTATAGGCAGACCAGTTGCTCGCTTGCGAAAACTTGTTTTGTTTGTCTGAAAAATACTTTTTCTAGTAGTGGGTCCCATGGCCGGAGCTTGGTCGGGAAGTTGTTCACCCGGACGACGCAGCGCAAGAACTCGCGACAGCGGCCGGAGCCATAGACGACGACGGCCTCGGCCATGGGGTGCTTCCCCGCGGAGCAACTCCCCTCGCAGGTGCCTGCAGAGGCATCTTCATCAGACATGTGGTAGTACATGTAGTTGAAGGGGCAACGTAATTCTTCATGGCTGCCATCGTCGTCTCCACAGATGTAGCACAGCTTCTTGCCATCTGCAGGTAGTTCCCTCTGGAAGGGCAACATGGAGGACATGACACATCTGAACCCCACCACATCTTTGAATGAACAAGATTTGGTTAATTGTTGTATTTATCCAGGATTAAATTTTGATTAGAATACTTTCAATAAGATAAGAGATGCTGCCTCTGTCTCATTTTGTGTTATTAAGCATATCATCACTATCGTAGTCCGCAC

Coding Potentia
Explanation CPC Score
noncoding -1.20004
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0435800.1 9 12398704 A G
Osa09LNT0435800.1 9 12398005 T C
Osa09LNT0435800.1 9 12398035 T C
Osa09LNT0435800.1 9 12398055 T C
Osa09LNT0435800.1 9 12398326 T C
Osa09LNT0435800.1 9 12398556 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0435800.1 osa-miR5800 Translation 5.0 18.172 1 21
Osa09LNT0435800.1 osa-miR528-5p Translation 5.0 12.711 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0435800.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0435800.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0435800.1 9 qLG-9 Physiological trait Germination/dormancy G103 R1751
Osa09LNT0435800.1 9 nan Resistance or Tolerance Drought tolerance R1164 R79
Osa09LNT0435800.1 9 nan Morphological trait Shoot/Seedling RG553 RZ206
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus