>Osa09LNT0436400.1

AGTTATAAAACTTATCAGGGTGGCAGAGATCAACTCAGATTGCATTGCTCTTGCTACAAATACAATCTCCATGAATACCACATAAACAACTTGGCACAAATTCACTGAAAAGTGAGCACATATAAGGCCAATTCTGCGGACTAAAATGCTGAGCAGTTGGCCAGCAGCAGTAGTGATTTTGCTCATCACTGCAGTACAGCCCCTAAAACTAGCAGCTGGTGTACGATTCCATCCAATACATGGTAAAAAAGAAAGAAAGAAAAAAAAAGGAACAATCTTGCAGCACTAACACATAATCTTGCAAAGCCCCAATCACACCATGTATGTCATCCCGACACGCATAATGTTCGAGTGAGGGACCTTCAAGGTTGCGGTTCCAGCCCTGCAATTCCTCCTGAGGAACGCGTAGAAGTAATTGATGATGAACTTCTTCGTGAAGAACGATTCCTTCCTCGCCCTCACGTCACCGTGTGCCAAGAGGTATGTGAATCCAGAAGCTATGGCTTCTCTCAGTGACTCCAGCTCATACTCCAAGCTGGGGTCTTCTTCTGAGATGGAACTCGTGGGAAGCACAGGTGTATTGCCTTCGGTGATGAATGTTTGGGTGCCATCACCCAGCCTCTGATCAGAAAGCAGTGGAACATGTAGATCCCCAGCCTCAACAGGAGATGAAGGGATATCAGATACAACAGAAACATCGTCACGCTCTACTGCCATTGCGCTTGCTTCAAGTGCCATTTCCTGGGATTCCTTCCTCAAAAATTTCTCCAGGGTTTCAACCAAAAGCTGCTCAAAGAAGCCATGTTCCTCTTTCCTGACATCCTTGTAACCATACCGTGCAACACAACGGAACATATGGTAGTCCTTTTGGCCAATCCTTCGGAACAAGAACCTTTCTTCAAATGGGACATATGGGACAGGAACATACTTTATGCAAACGAAGACAATCGTAGAGTGCATTGCTGGGAGTGTGACCAAAAGATGGCCAAAGATCGACGGAATTCCCTGGACCAGCTCATTGTACACAAGACCAATCCCTGGAACTCTTACTGTGCCAAGCGTGGATCCCAGGTCAAGGATAAAGTCCAGGGAAATCTTCCCACGCATCTCGCTCTGGTACTTCAACACACTTCCGTAGTTCCATGTGTACATTATGCAGAGGAACAATGATGAGAAAGCCAGAGGTAACCATCCTCCTTCTTGTATCTTTGACAGAACGGCTGTTAAGTAAACAAACTCCACAGAACCAAAAATAACAGGGAAGCACATAACGAGGAACAAATTGGTTTGCCATATAAGAAGCATCACCAACGTAACCAGTGCAGTGCTAACCATCATAACTCCAACTTCAGCAATACCATAAGCATTGGCAATGTCGTTGGTACTCCTGAAAGTGGCAACAATGATGATGCACATGACCATGAGAAACCAATTCATAACAGGAATGTAAATCTGGCCCATGACTTTCTTGGATGTATGAATTATTTTAATTCTAGGAAAGCAACCAAGAGCCATGGCCTGCTTTATGCAAGAGAAAGTTGCTGATATCATAGCTTGGCTGGCAATCATAGCAGCAAGTGTAGCAATCACAAATACTGGCCAGAAAAGAATTTCTGGTACAGAATCATAAAATATTCTTTCTACAGCAAATGGATATTTCATCAAATATGCAGCTTGGCCCATGTAAGCGATAAGCAAACAAGGGAATACCACAGCTGTGAATGCTACCTGTATTGATTTCACAGAGAAATGCCCCAGATCTGCAAACATTGCTTCAGCTCCTGTGATGCACAAGACACAACCACCAAGAGCTGACCATGCCTTTATACCATTCGTCTGGAAAAATAAATAGATATACACTGGATTGAATGCTCTCACAACAGATATATCATATTTAGCCAAGTTGTAAATTCCAATGGTTCCCAAATTAATAAACCACAGTGCCAAAATAGGAGCAAACATGAAACCAACTTTCCCAGTTCCAAACCTCTGTACGCTGAACAATAGTACAAGAAACAGGATCGAAACGATTACAACAGCATCTGCGTAGAAAAAACACGTCTTGTAACCTCAGAAAGTATATAAAACATCAGTTAAATGCTTCCGTAATGAGTTAATGATGTATCATATAAGCAAATTTCAATCGGTGATATTTAGCAAGGCATACAGAACATCAAACCTGTCCCAAATCCAGGAACTCGACCTTGCAGACCACTGACAGCAGACATAACTGAACAAAAGTAAAAAAGAATGGTTGGATCAACAATTAAGAAAAATGTGGGTGGAGATAGCAGAATCTCTGTTACTACAGTCAGGAAACATTTTTGTTCGTGAAGCACCTGACATCGATGGAGTGAGAATGCCATCCCCGATTACCATAGAAGTTCCCATCAGAACCAAGAACAAAAGAATGTTTTTGAAGACTGGATTCTTTTCAAGGGATTCTTTGACAGATAGAGCTCGCTCAAGCTCAGGGGTAGGCAACTTAAGCCTAAAGCTAGAAATATCCTCATCCACACGTTGCTGATTCGGAAGCAGACTAACTTTTGCATACCTGCAGATCAGTGAGTACAGCGCGAAAGTGCCTCCTGAAAAATCATGTAACAACACAATCAGTAAGCCAACAAATTCAGAGAACACCAAACCGACAGGCAGTTCACATGATTGGCTCTACATATCTGATGTCAAAATGGCACAGAGCTATACCTTCTCCGTTGTCATTAGCTTTCAGAACTATAAAGACATACTTTGCGAAAGGGATCAACGCGATGGTGTACATGACCAGAGAAAGCGCTCCAAGAATCTCGACCTCGGACTTTATGGGCACCTTGCTGAACACATCGCTGAAGACATAGAGAGGGCTCGTGCCCATGTCGCCGTAGACGACTCCGAGGGTCTGGAACGCCATCGCCACGGTGCTCAGCATTGATATCTCCTTGCTGCTGTGGCCGTGCGCGCCGCGGACGGACATGGCCTCGACGTCGAGGGAGTCGACCCGCCTCGGCTGCTTCCCGAAGCGCCGCCGGAACGCGCCGGAGGACGCACGCGAGAGCGGCCCGCCTCCGCCTCCGCCTCCGCTGGCGCCACCGGCGGAGGCGGCGGAGTCGACGGAGAGGCGGAGGGAGCGGTCACCGTCGAGCGACCACGGCGCGGACTCGGACGAGCCGACCTCGCTGCCGTCCACCCACCTCGAGCCACCCGACCGCGTCGCCGTCAGGAGCCTCCGCAGCGGCGGCGGCGGCGGCGGGGGAGGCGGGGGTGGCGGGGGCGGTGCAGGCTCCTCCTGGATCCCGCTGTCGTCGTCGTCCATCCCTCCCGCAGCTGCTCCGGCGACGGCGTCGGATCAGACAAGAGGAGGAGGAAGAGAGCGAGGCGTCGCGTCGCGTCGCGTCTCCGTGTTTGTTTGTGTGTGT

Explanation	CPC Score
noncoding	-1.01774

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0436400.1	9	12664538	G	A
Osa09LNT0436400.1	9	12665533	A	G
Osa09LNT0436400.1	9	12665633	G	A
Osa09LNT0436400.1	9	12666170	T	C
Osa09LNT0436400.1	9	12666777	A	C
Osa09LNT0436400.1	9	12666878	T	C
Osa09LNT0436400.1	9	12667402	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0436400.1	osa-miR5837.1	Cleavage	4.0	16.55	1	21
Osa09LNT0436400.1	osa-miR1851	Cleavage	4.5	15.772	1	21
Osa09LNT0436400.1	osa-miR1857-3p	Translation	5.0	18.327	1	21
Osa09LNT0436400.1	osa-miR2122	Cleavage	3.0	16.377	1	22
Osa09LNT0436400.1	osa-miR5502	Cleavage	3.5	20.206	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0436400.1	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0436400.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0436400.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0436400.1	9	qLG-9	Physiological trait	Germination/dormancy	G103	R1751

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus