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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0436500.1

CCCAGATCAAAGCAACGGCTAGCCCTAGCCGCCACCCCCCGCCGCCGGCGTGCCTCCTCGCCGTTCTTCTCGTTCTCTTCTCTTTCGCTGACCTGGCCGCCGCCGCCGCCGCCGCCGCCGCCGGCGATCCGAGCGGGGGTCGCCGTCCGCTCTTCTTCCTACTTAGTCCTCTCCATCTTTTCCCGAGATCCCGACACGTCCCCTCTCTGTTCGCTTCTTAATCCCACCTCTCCCTCCGCCGTGTGTTTGGTTGGTTCTCCGCTACTGCTACACGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGCGGTGTCGGTGGAGAGTTGAGGTTGTGGCAGCGATGTAGTGGCTGTCGCGGTGGCGAGCGGACGCGCCGCTGGGAGTGGTCTCCGCCGAGACCGAAACCTGCGAAGAGGAGATCGCCGTCACATCCTGGAAACACCTGCCGGCGCTCGGTTGCCATGGTCGTCGCACGATCTCACCATCCTCTCACATATCAGGCCAAGAAGGCAGCGATAGAGAGTCCTAAGGTACAATAATTTCAAAGCAGGTGAGAAATTACAACGCTCTGTTGTTTCATGCTGCTCCTTCTGAGCTAGTTGGTCTGAAAACCTTCCTCGTGTGCTTTAGGTGTTTCGATCAGATCCAACAAGTAGATCTGTTTCTCTTGTAATTTCGGTGGTTGGAATGTGCGTTAATGAGAACACCTTTTGAATGTTGCCATGTACGTTTGTAAGTGTATAATGCCTTCAATTCTGCTAGATCTTCAGGATTTAGTCTGTTGCTTATGTTATTTCAGAATGGATGGGGACCGATTCTGTTGTTACGGCCATGTTGTAATGTAAAGTTAGTCTGTAACCTATTCTGCGCAAATTTGGAAGGGCAAGAATTTGGGGGTGATTGCTGTGGCTGTTGTGCATCTGCAGCCAATCTCAGTTGCAGCTGCGGCGGTGG

Coding Potentia
Explanation CPC Score
noncoding -1.06534
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0436500.1 9 12839911 G T
Osa09LNT0436500.1 9 12839867 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0436500.1 osa-miR390-5p Cleavage 4.0 17.673 1 21
Osa09LNT0436500.1 osa-miR1858a Cleavage 4.5 18.007 1 21
Osa09LNT0436500.1 osa-miR1858b Cleavage 4.5 18.007 1 21
Osa09LNT0436500.1 osa-miR2907a Cleavage 4.5 19.469 1 22
Osa09LNT0436500.1 osa-miR2907b Cleavage 4.5 19.469 1 22
Osa09LNT0436500.1 osa-miR2907c Cleavage 4.5 19.469 1 22
Osa09LNT0436500.1 osa-miR2907d Cleavage 4.5 19.469 1 22
Osa09LNT0436500.1 osa-miR5161 Cleavage 5.0 16.506 1 20
Osa09LNT0436500.1 osa-miR5513 Translation 4.0 19.127 1 21
Osa09LNT0436500.1 osa-miR5523 Cleavage 5.0 15.212 1 22
Osa09LNT0436500.1 osa-miR5819 Cleavage 2.0 15.947 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0436500.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
Osa09LNT0436500.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0436500.1 9 qLG-9 Physiological trait Germination/dormancy G103 R1751
Osa09LNT0436500.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus