>Osa09LNT0436900.1

AAAAGAACATATACTAAACTAATAAACAAACCAAGATTTTACAATTACATCACAGGCTATGGTACAAAGCTATCAAGCAGATATGCTGGCGTAAAACCCCAACCAATCAAGCCTCTAAAAATAAAAAATCAAACAGCAGAGATAACGACCAGCTGCCTTAGTCGTCGCCTGCCGTGGATATGGCAAGCGTTCTTCTGGAGATTTCCATGTGGAGTTGCTTTACGAGGTTGATCCAGGCACCAACGCTTTGCCCGTCTATTGTCACCCAGTCAACGACTGTTGCTGCTGGTTGTTCATACCATTCGTCAACCAAACCCCTAACACGTCGGCAATCCTCAAAACACCTTTGAGCCTCTTGAACTGCGTTTCTCAGTTCTGGCAACCACCTTTCTGATACCATCTTTTCTTGTTCACCAGCTAATTTAAGACAGTAGTTGGCCACCCTTTCATATTCCTGTTGAGCACGATGTGCTCGGTTCAGCAAAACACGATCATTCTCAACCAGATTTCTCCGCGTGTGCACCAAATTAATAGCCTTTGATAAATCCTCTAGTATACTAGCTTCAGAACCACAAGGTTTTAGGCAGAACTCCAGTGAATTTAGAACTGATGCCAAGCCAGAATCAGTGCCTTCTGTACCTGGTGAAACAGAATTGTACTGAAGAGCAGTAGAGATGCGGCATATGGATGGCACAGCAGATGGATCTCTGGCTCCAGCTCGTGCAGTTAACAAAGCAGCATGTTTCTCTGCAGCTGCAACTGCTTCTGATCCTGTAGCACCATTGGAGCCCAAAGCCTCCAAAAGAGCCTGAGGAGTTGCTGGCAACCTGCATAAGCTGTTATCCAAGCTCTGACCAAACGCAGACAATTCTCGCTCGATGAGATCCCTTGAGTTAGTTGACATGTCTACCACAGCATTACAAGCAGGGATGATTGTTCTTGACGCATATCCTCTTGCAGATAATGGCTGTTGCTCCCAAAATGTTGATGCCTCCATATTGGCCCGCAGAAGAGCATTGTAAATGCACTCAAGTTCTGATCTACGAGCATCAAATTCTTCTATTTTCTTCCACTTTTTCTTCAAGGAATCTTCCGCTTCTTTCCACTCAGCACATAACTTGTACAGACGCTGTACCTCAGAAGTCAGTGTATTCAAGCTTGCCTTTAACCCAGCAACTTCTCTTTCCTTCGCCCAAACATCGAGCTCCAAGTGTCTGCTGTTAGTCATGTTCTGTGAGGTGTTCCCAGTAGGCATCTTTTTACTTCCTGCCGCATCACTAGTGCCATGAAGGCGTTGCAAGAGCTTCTGGCTTTTAGCTTTAGCTTCAGCAGCTTTATTTAAAGCATCTTCTGTGGCCAAGAATTGCTGAACATGTTCTTTCTGTCTTTCCAGTAGCTGGTCATATGTTCCGCGGGTTGACAGCTCTGATCCAGTCTTTCCATTGCCATATACTTGATATGGCAAGGGTGAGCTTGCATCAGTTGAAGCAGCATCAATGACCTGCTCATTTTCATATTTATACCTCAAAAGTTCTGCATCAGCACGTATGTCAATCTTGTCTGTTTCTTTATGTATGAGTATTTTCATGCGTGATGTGTATGTAATGATTGATTGCAGCAGTAATGAAGGATTTTTTAGGGAATCCAATGCCACAGCTTTAACATCCTGTGGTATTTCACCATCCAGATCAATGCCCAACTTTGCTGCATCTAACTGGGAACTTGAATTGATGCCACTTCCTTCAAATGCTGGGAAAGAGCTTCGAATCATTTCGATCATATCTCCAGCAAGAGTTTCACATGCCTTCCGAATACTCCTTTCACGTGAGGTCTCTACAAGATCATCTGACAACCTGTTGCTTTTGACAGTCGAGTAGAGTTCTTCTCTCTCGCTCTGCAACTGCATATCCTCAACAGCATCTGCAGGTCCACCCGCACCTATACTTGACCTTCGCACATCCCTTGCTTGATTAACAAATTGATGTAGTCGTCGTTGGTATTCAGCAAATATCTTGCATGCTTCATCGCATTGCTGTTCGTATGCCTCAAGCATAACTTGTTTGTGCCTGGCATTGGAGCGCTCCCCGAGGACGCGCTTCCGCTCGGCCTCCTCGCGCGCGACCTCCGCGATGCGGGCGCGCAGCTCCTTCCGCTGCCTCCGCACGACCCCCCGGAGCCGCTCGGCCTCCTCCGCGGCGAGGTCCCGCTCCCTCGCCTCGGCCTCCCTGGC

Explanation	CPC Score
noncoding	-1.03419

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0436900.1	9	13185388	T	C
Osa09LNT0436900.1	9	13186763	T	G
Osa09LNT0436900.1	9	13187304	G	A
Osa09LNT0436900.1	9	13187835	C	A
Osa09LNT0436900.1	9	13190204	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0436900.1	osa-miR396a-3p	Cleavage	4.5	22.353	1	20
Osa09LNT0436900.1	osa-miR396b-3p	Cleavage	4.5	22.353	1	20
Osa09LNT0436900.1	osa-miR166h-5p	Cleavage	5.0	11.408	1	21
Osa09LNT0436900.1	osa-miR419	Cleavage	4.5	14.553	1	21
Osa09LNT0436900.1	osa-miR2096-3p	Cleavage	5.0	9.456	1	21
Osa09LNT0436900.1	osa-miR396f-5p	Cleavage	5.0	22.313	1	22
Osa09LNT0436900.1	osa-miR3982-3p	Translation	4.5	12.709	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0436900.1	9	qLG-9	Physiological trait	Germination/dormancy	G103	R1751
Osa09LNT0436900.1	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0436900.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0436900.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus