© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa09LNT0437300.1
GCGATAGAAAATCCCTCCAATTTTTTTCAAGTATAACTACAGTATAATCATAGTGTAATTACATTATAACCATTCACCAATCGTAAAAAAAAATGCTTAATTTGGAGGGAGGGAAGTTTGGGCTTTGTGTTGAATAGAATGGACTGGACCGTACTGAGTCACAAGTCACGACCGTGAGATCGTTGCGCCGCACTGCTGCACGATCATCCATCTTCTTCCCTCCACGCCGACGGCAAGGAGCGTGCTGCGGCCTTGTTCACAATCACCGCGTCGTACGTGTGCATTCGTGGAAAAATAGGTTCACTTTGGGTCTCTCATCTTGTTGTCAAGTTTGAATCGCATCCCTAAACCGCAGTATCAGAAATCTTAGCCCCACTAAGATGCAAAACAAGATTAAATTAGGTCCTCAAGTAGTATAGATAGTTGATTTCGCTAACATGATAAATTGACCTGGTCCCGTACTCGTGTTTTCTGACTAGGATGGCATGTCAGCAAAATTAGGCATCTATACTGTCTCGAGATTTTTTTTTTTTTTGATGTTTTTTACATTTCTGGTATTATAGTTAGGGGACCTTAGATAGACTGGCGTAAAACTGTGGTGAACTTCGGGTGGGTTGGATTTAGGTTATATGTCAGCCCATTAGCAGGCCTAGTACTGCCGGCCCACAAAACAACGAAGCGATCTCGCGTCCCCTGTCCACTGCCCTCCCTTCCGCCGCCGCCTCCTCCTCCTGTCCCCTCCCTAAGCTCTAATCTTCCGCCGCCACCGCCACCGCCGACGACCCCGTCCCCCTCCGGCTCCGATGGCGAAGACCACCAGAGCGTGGAAGGCGCAGGCCGCCAGCGACCGCAAGGACAAGGCAGGGCAGAAGGCTGCGGAGGACAGCTTTCAGTGCTCCTGCGGAAGATTCTACAAAGGATCTACCACAAGGGAGAACGAGCATACGCAGAGATGCCTCGCCAAGCGGAAGGAGGTGGCGGCCGGCCGAATGGCGGCGGAGGCAGCGAAGGAGGCCGCCAACGAGCCGTAGGTCAACAGGAAGGCCCCGACCAGAGAGCATCTAGATCTACAGGTAACGCCTCGAGAGCCATCTAGCTTGTTGTTGTTAATTGTGATTAGCAGTTTAACACAATTGGAGTTGCGAGTTACTGATTGTGCACAATATATCTCTTCAGTGGATTCTCTGCAAAATAATACTGATGTAGGTGAAATGATGTATAAATAGAAATCACACTCGAGTAGTAAACACACCAGTTGGCTCAACAATCTACAGTAGAGTGTTCACAAAATTTTGGCCCTAGTGGTTGGGAGAAAGGAATTAGGGTCGACAATACAGAGAGCTCAGTTGTCAGTTGAACTCACACTTGTGATGGAGTTGTACTCACACTTCACACAGCAACTGTAGTCTTTTCTCAGGAATAACTTTTGCTTGCATTTCCTTTGGCAAATTGACATAATAGTTCACATTGTGGAACTTCATGGTGAGTGGCTGAAAAGGTTACATTGCCATGGTCATGTCTCGTGCAATAGCTCCCATTATCCTGAAAAGGCCCAATGCCATTTGATGTATAGAGAATAACAGCAACATGAAACAAAAGAATCTGCACATGGTATGTTAGATCAACATGAACAAATACAAAAGATGTAGCTAGTTAGGCATATTGATCAAAAGGGTACATGTCCTGGGTATACCTGTCAACCATTGGTGCAAAGCCTACCGTGTAGTATACAACACATGACCATACAACAGCTTCAATAAAGGAATATGGAAATCTTAGTATCCAATTTGGAAGTGAGAGCCCATGCAGGATGAAAGAAATTGTCTCCCTGTTTATAGAACACTGGAAGTCGAGAAATATTCATGCCAGATAAAGATTCCCATTTTGTTCATCAACAGGATGTAATCTTGTCCGGAGAAACAGTGTGGATGTAATGATCCCAACAAAAGCAACCTGGGAAGAACCTGAGGAGAATCTTTATTACCACACGAACTACTTAGATTGGCCTCCAAATATGTACCATACTGGGATTCTTTGAATACAGCAGCCATTTCTGATGCAGAAATAAAGATGTGTTGTTTTGACTGATCAGACCAGTGCCGAGCTTGATATTTCTTTGAAATCACATGCTCTTGCTCAATCCACCAGTGTCAGCAATGTTGCTTGCTCGACTGTGGATTCCTTTGATCACTGCTGCTGCTGCCTGCTAATGCTCGAAGAGAAGGGAGGTGCAGACCTCCGGGGAGAAGATATGGGCAGAGGCGAACCCCACCGGCGCAGATCAAGTTGCCGTGTGCTCAATGATTCCCTCTGATTTGGGTCACGGGTGCAGGTGAGCTTGCCGTGTGCTCAATGATTCCCTAGCCACCTCTGATTTGGGTCACAGGTGCAGGTGAGCTCGAAGATCTGATTCTATATCACACCTGGCCACCGCCTAGTTGCATTGTCATCCGCCATATCGCCTAGGCACTTGCGGCAATGCCTTGATGCCATCTTCTCCATACCGCCTAGGCACCGATGTTGACTGCCTTGGACCAGCTAGGCAGGCCCTCCCGCCTAACAGGCTGAGTTGTGTCAAATCATAGCGCTAACCCCGTGCTTAGGGCCAATTTCTGGAACACTTTAAACGAATTTTTTTGCATTCTCTTTATATTAAAATTACAGTTTATGGTTGATTGTAGATTTTGCGTAATACATGTTATCTGTTTTCTATAGCTCCTTACATGCTAAATATTTGAATATGCAAACCATTAATTTGTGACTTGTTTAATTATTGCAGGTAGGACAGAAATGATACTCGAAATGCCAGGAATAAGTGTTACTACATGCATGGAGACTTTTACATAGACTTTTACTATTGTAATATAAAATGGCTCTTTCTTTATCTACGATAAAATTGAAAGTCGTTCTAGTATAAGGGAAATGAGACGTTATTCGAATAGCTATCATGATTTACAATCTTATTCATGTAAATGAAGTTCTGTGATTTGACTGCATACAAACGCTATATATCTCTAGCATAGCTATTTCTTGGGGCAATTTTGTTCAATTTAAGGTATTATTTGCGGCAATTTTATTAAGGTAAAGATATTATTTGGGGTAATTTTGTTCTTGTCCCCACACTGAGATACACTTGTGATTTTATCTATTAGTTCTGTACTAAATGTTCAGTTATTGTGACATATCAAAAGGTTGTTTTGCATGCAAAAGTTTACTATACCATGAGACAACAAGTTTATCATCTTGTAAGTATGTGATAAAGTTGTTTGTGGTGTATTATCAAATGTAGAATAGTACGAATTAATATTATCATGCTTATCAATTGTTTATGTTGTTGTCTACATTTTGTGCATGAAAACTCGAACTGCACCATGGTCTTTGTGGACAATGTGTTGCATACAAGACCTTCACCAAGAGTAATGCGATCACTTGATATAACTTTTACAATAAGAGTTGTTTGTATTTGTGATGTAAATTTATTAGGTTTTTATACTCTCAATGTTAGCAGAAAAGCACATACGTCAATCTAATTAAAGTTCAAATGAGATAGCAGACACACCTTATCATTGCATACCTCTCAGGGATTCCACGATGATTGGACGATCTGACAAATTAAGCAAAGACGTATAAATGATATTCATCCAAAAAAAATTAGATCATGTTCATCCACACGATAAAAAATTACATTGTACTTTGGAGGTTAAAAAGACATCCGAAGTATGACTATCCAAAGATCAGACTTGGCATTAAAGGCAGTTTATCGAATTTTACAGAAATTTTAACTGAGGTGGTTCAGTTTCTATGAAATTCCTCAGTTCAACAGAAGACCGGAGGTATGCTGACATACCATTTTTTTCACACGTCCCTGTGGCGTGTTCGGATTTGGGGATAGAAATGGAGTATTGATCAGGATAAGATTGGCTAATTCAGTAATCCTAACGACGGAACCTGTCCCCATAGTCTAAAATACCTAGGTTCGTAATTAAGAGAGTTGATGTGACAAGATAAAGCTTTTGCAAGATTATAATAAAATTAAGTTTGAGTAGACCCATGGAAAAGGTAATTAACTTCATCAATTCCACCTTTTTAGTCACTAAACCAAAAAAATAACTCAAATAACTCTCTTGCCAGACTTTTAGCAATTAACCTAACATCGACCAACCTTATCGCGGAGGATCCAGCATACAGAAGCAGTGAGTTATTAATCGTGATCCTTTTAAGATGAAGCCTAATAGCATACTAATCGTGATGCTAATCAAGCATTACTACCATGATACTATACGGTAGACCAATCGTAATACTTCTCAAGATTAAGCTATTTATGTAGCTACCATTCCGGTGCCAAATAGTTTAACCGTGCAAACCATAGAATTAGATGGCCCGTTCAACAAAATTAAAGGAAAAAAAGATCATGTGCATTTATTTTATAACCGTGCAAACAATATTGTAATTACCAGCACTCATAAATCCATTCATTCCAAAAAAATAATAATAATAAATCCATCCATTCGAGTTGCGTTTATCTAGAGGCAGCACATGACCTGTACCATCATTAGAAACATAAGGATGTGATCACTTAGGTAGATACAGATAACTCACCTCCATTGTGGTTACCGGCCATATCAAGAGGAAGCCGGATGAACATGAACGTAAAACATTTTCCAACCTCTAAAATGAACGGTCTTTTAAAAATCCTCATGTGAATCCGCATAGTAACAATCTTTCAAAATCCTCGTGTTAATCCACAATAGTAGAAGTCTTTCAAAATCCTCGTGTGAGTCCACATAAATACAGAACAATTGGAATATTGGAATGGCCGTGCATTTTAGCTCAGTTTGCAAAACTATATATCACCAGTGATTGAAGAAGGAAAAAAAAAACCATCACTCTGACACCTTTTGAAAGACAACCCAGAGGGTGAAATGAACAATATTTGGTACCGGACACCCAAAACGATGTGTGTTCCTTTATCCTCCTGAAGCGACGAAATTATGGATCTCTGACTTTATAAACCACACCATAATAAGATAACCGATCTCTGAATTTCATAAACCACACCATACTAAGATAACCCCTTCCGTAATTACCATCCCGACAGAGATTGAGCTTCCTCGGCAGCAGTAATGGTAAAAAAAAAAGCTTTCCGACTTGGAGCACTGCACATCCTCCATGCTCATCAAATCCTCTCCCCAAAATAAAGTCCTCCTCATGACCTCAGAGCCCCAGGTCTTCGCGCATCGGAGGCCCAACGCCGCCGCCGAAGAGGATCCGAGGCACCGGCGCCGGTGAATCTCACCCACACGGCGAGAGCACGACACCGATCCAGGTCACCTCCCGGCGACAGATCCACGCGATCTGCACCATCATCCCGCTAAGCTTTCTCTCTCTCTGCTGTTCTTCCGATCCAACAGCAGATCGAGAGGGAGCTTTTCCTCTCTATCTCGAGAGAAAAAGAGTCCTGATAACCGCCACGGAACGCATCCGGCGAAGAAAAGCTGTCGTCGGCGGCGAGGAGATCGATCTCCAAGGCACCCCGGCGGCGGCCGGACGCTCCCCCACACGGTGCTGGCCGGCCCTGCGTGGCGGCGGCGGCGCCGATCTAGGGTTTGGGCGGTGGAAGGAAGAAAGGGGAGGCCGAGAGAGTCGTAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa09LNT0437300.1 | 9 | 13570135 | A | G |
| Osa09LNT0437300.1 | 9 | 13571190 | A | T |
| Osa09LNT0437300.1 | 9 | 13568481 | G | A |
| Osa09LNT0437300.1 | 9 | 13567279 | A | G |
| Osa09LNT0437300.1 | 9 | 13567281 | G | A |
| Osa09LNT0437300.1 | 9 | 13567575 | T | C |
| Osa09LNT0437300.1 | 9 | 13568228 | T | C |
| Osa09LNT0437300.1 | 9 | 13568612 | T | C |
| Osa09LNT0437300.1 | 9 | 13568868 | A | G |
| Osa09LNT0437300.1 | 9 | 13569306 | T | C |
| Osa09LNT0437300.1 | 9 | 13569674 | C | G |
| Osa09LNT0437300.1 | 9 | 13569690 | G | A |
| Osa09LNT0437300.1 | 9 | 13569848 | C | T |
| Osa09LNT0437300.1 | 9 | 13571740 | T | A |
| Osa09LNT0437300.1 | 9 | 13572882 | G | T |
| Osa09LNT0437300.1 | 9 | 13573010 | G | C |
| Osa09LNT0437300.1 | 9 | 13574338 | C | G |
| Osa09LNT0437300.1 | 9 | 13574815 | G | C |
| Osa09LNT0437300.1 | 9 | 13574855 | A | C |
| Osa09LNT0437300.1 | 9 | 13572136 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa09LNT0437300.1 | osa-miR5534a | Translation | 5.0 | 19.475 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR5540 | Cleavage | 5.0 | 13.235 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR5797 | Translation | 5.0 | 9.96 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR5812 | Cleavage | 4.5 | 23.05 | 1 | 24 |
| Osa09LNT0437300.1 | osa-miR5516b | Cleavage | 2.5 | 19.811 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR399e | Cleavage | 4.5 | 13.258 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR399f | Cleavage | 4.5 | 13.258 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR399g | Cleavage | 4.5 | 13.258 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR156k | Cleavage | 4.0 | 18.542 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR413 | Translation | 4.5 | 13.153 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR417 | Translation | 5.0 | 10.332 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR1854-5p | Cleavage | 4.5 | 7.249 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR1428b | Cleavage | 5.0 | 12.78 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR1428c | Cleavage | 5.0 | 12.78 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR1428d | Cleavage | 5.0 | 12.78 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR1428e-3p | Cleavage | 5.0 | 12.78 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR1866-3p | Cleavage | 1.5 | 18.285 | 1 | 22 |
| Osa09LNT0437300.1 | osa-miR1320-5p | Cleavage | 3.5 | 22.476 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR2090 | Translation | 4.0 | 16.994 | 1 | 22 |
| Osa09LNT0437300.1 | osa-miR2098-3p | Cleavage | 4.0 | 15.204 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR2100-5p | Translation | 5.0 | 14.207 | 1 | 22 |
| Osa09LNT0437300.1 | osa-miR2106 | Translation | 4.5 | 23.552 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR2872 | Cleavage | 4.5 | 21.557 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR2874 | Cleavage | 4.0 | 9.115 | 1 | 24 |
| Osa09LNT0437300.1 | osa-miR2920 | Cleavage | 5.0 | 13.621 | 1 | 23 |
| Osa09LNT0437300.1 | osa-miR2920 | Translation | 5.0 | 19.307 | 1 | 23 |
| Osa09LNT0437300.1 | osa-miR2923 | Cleavage | 3.5 | 13.621 | 1 | 22 |
| Osa09LNT0437300.1 | osa-miR2926 | Cleavage | 3.5 | 21.877 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR2926 | Translation | 4.5 | 20.248 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR1862f | Cleavage | 3.5 | 8.72 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR1862f | Translation | 5.0 | 7.884 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR1862f | Cleavage | 5.0 | 24.889 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR1862f | Cleavage | 5.0 | 11.741 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR1862g | Cleavage | 3.5 | 8.72 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR1862g | Translation | 5.0 | 7.884 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR1862g | Cleavage | 5.0 | 24.889 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR1862g | Cleavage | 5.0 | 11.741 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR3981-3p | Cleavage | 5.0 | 17.513 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR5161 | Cleavage | 4.5 | 23.764 | 1 | 20 |
| Osa09LNT0437300.1 | osa-miR5339 | Translation | 5.0 | 13.857 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR5495 | Cleavage | 5.0 | 18.256 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR5501 | Cleavage | 4.5 | 11.356 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR5516a | Cleavage | 2.5 | 19.811 | 1 | 21 |
| Osa09LNT0437300.1 | osa-miR5337b | Translation | 3.5 | 14.216 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa09LNT0437300.1 | 9 | clr9 | Resistance or Tolerance | Cold tolerance | RM285 | RM434 |
| Osa09LNT0437300.1 | 9 | qAC9 | Physiological trait | Eating quality | RM4413 | RM5122 |
| Osa09LNT0437300.1 | 9 | qLG-9 | Physiological trait | Germination/dormancy | G103 | R1751 |
| Osa09LNT0437300.1 | 9 | rdw9 | Resistance or Tolerance | Drought tolerance | R79 | R2638 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
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