>Osa09LNT0437300.2

ACATTTCTGGTATTATAGTTAGGGGACCTTAGATAGACTGGCGTAAAACTGTGGTGAACTTCGGGTGGGTTGGATTTAGGTTATATGTCAGCCCATTAGCAGGCCTAGTACTGCCGGCCCACAAAACAACGAAGCGATCTCGCGTCCCCTGTCCACTGCCCTCCCTTCCGCCGCCGCCTCCTCCTCCTGTCCCCTCCCTAAGCTCTAATCTTCCGCCGCCACCGCCACCGCCGACGACCCCGTCCCCCTCCGGCTCCGATGGCGAAGACCACCAGAGCGTGGAAGGCGCAGGCCGCCAGCGACCGCAAGGACAAGGCAGGGCAGAAGGCTGCGGAGGACAGCTTTCAGTGCTCCTGCGGAAGATTCTACAAAGGATCTACCACAAGGGAGAACGAGCATACGCAGAGATGCCTCGCCAAGCGGAAGGAGGTGGCGGCCGGCCGAATGGCGGCGGAGGCAGCGAAGGAGGCCGCCAACGAGCCGTAGGTCAACAGGAAGGCCCCGACCAGAGAGCATCTAGATCTACAGGTAACGCCTCGAGAGCCATCTAGCTTGTTGTTGTTAATTGTGATTAGCAGTTTAACACAATTGGAGTTGCGAGTTACTGATTGTGCACAATATATCTCTTCAGTGGATTCTCTGCAAAATAATACTGATGTAGGTGAAATGATGTATAAATAGAAATCACACTCGAGTAGTAAACACACCAGTTGGCTCAACAATCTACAGTAGAGTGTTCACAAAATTTTGGCCCTAGTGGTTGGGAGAAAGGAATTAGGGTCGACAATACAGAGAGCTCAGTTGTCAGTTGAACTCACACTTGTGATGGAGTTGTACTCACACTTCACACAGCAACTGTAGTCTTTTCTCAGGAATAACTTTTGCTTGCATTTCCTTTGGCAAATTGACATAATAGTTCACATTGTGGAACTTCATGGTGAGTGGCTGAAAAGGTTACATTGCCATGGTCATGTCTCGTGCAATAGCTCCCATTATCCTGTCAACCATTGGTGCAAAGCCTACCGTGTAGTATACAACACATGACCATACAACAGCTTCAATAAAGGAATATGGAAATCTTAGTATCCAATTTGGAAGTGAGAGCCCATGCAGGATGAAAGAAATTGTCTCCCTGTTTATAGAACACTGGAAGTCGAGAAATATTCATGCCAGATAAAGATTCCCATTTTGTTCATCAACAGGATGTAATCTTGTCCGGAGAAACAGTGTGGATGTAATGATCCCAACAAAAGCAACCTGGGAAGAACCTGAGGAGAATCTTTATTACCACACGAACTACTTAGATTGGCCTCCAAATATGTACCATACTGGGATTCTTTGAATACAGCAGCCATTTCTGATGCAGAAATAAAGATGTGTTGTTTTGACTGATCAGACCAGTGCCGAGCTTGATATTTCTTTGAAATCACATGCTCTTGCTCAATCCACCAGTGTCAGCAATGTTGCTTGCTCGACTGTGGATTCCTTTGATCACTGCTGCTGCTGCCTGCTAATGCTCGAAGAGAAGGGAGGTGCAGACCTCCGGGGAGAAGATATGGGCAGAGGCGAACCCCACCGGCGCAGATCAAGTTGCCGTGTGCTCAATGATTCCCTCTGATTTGGGTCACGGGTGCAGGTGAGCTTGCCGTGTGCTCAATGATTCCCTAGCCACCTCTGATTTGGGTCACAGGTGCAGGTGAGCTCGAAGATCTGATTCTATATCACACCTGGCCACCGCCTAGTTGCATTGTCATCCGCCATATCGCCTAGGCACTTGCGGCAATGCCTTGATGCCATCTTCTCCATACCGCCTAGGCACCGATGTTGACTGCCTTGGACCAGCTAGGCAGGCCCTCCCGCCTAACAGGCTTATCATTGCATACCTCTCAGGGATTCCACGATGATTGGACGATCTCCATTGTGGTTACCGGCCATATCAAGAGGAAGCCGGATGAACATGAACGTAAAACATTTTCCAACCTCTAAAATGAACGGTCTTTTAAAAATCCTCATGTGAATCCGCATAGTAACAATCTTTCAAAATCCTCGTGTTAATCCACAATAGTAGAAGTCTTTCAAAATCCTCGTGTGAGTCCACATAAATACAGAACAATTGGAATATTGGAATGGCCGTGCATTTTAGCTCAGTTTGCAAAACTATATATCACCAGTGATTGAAGAAGGAAAAAAAAAACCATCACTCTGACACCTTTTGAAAGACAACCCAGAGGGTGAAATGAACAATATTTGGTACCGGACACCCAAAACGATGTGTGTTCCTTTATCCTCCTGAAGCGACGAAATTATGGATCTCTGACTTTATAAACCACACCATAATAAGATAACCGATCTCTGAATTTCATAAACCACACCATACTAAGATAACCCCTTCCGTAATTACCATCCCGACAGAGATTGAGCTTCCTCGGCAGCAGTAATGGTAAAAAAAAAAGCTTTCCGACTTGGAGCACTGCACATCCTCCATGCTCATCAAATCCTCTCCCCAAAATAAAGTCCTCCTCATGACCTCAGAGCCCCAGGTCTTCGCGCATCGGAGGCCCAACGCCGCCGCCGAAGAGGATCCGAGGCACCGGCGCCGGTGAATCTCACCCACACGGCGAGAGCACGACACCGATCCAGGTCACCTCCCGGCGACAGATCCACGCGATCTGCACCATCATCCCGCTAAGCTTTCTCTCTCTCTGCTGTTCTTCCGATCCAACAGCAGATCGAGAGGGAGCTTTTCCTCTCTATCTCGAGAGAAAAAGAGTCCTGATAACCGCCACGGAACGCATCCGGCGAAGAAAAGCTGTCGTCGGCGGCGAGGAGATCGATCTCCAAGGCACCCCGGCGGCGGCCGGACGCTCCCCCACACGGTGCTGGCCGGCCCTGCGTGGCGGCGGCGGCGCCGATCTAGGGTTTGGGCGGTGGAAGGAAGAAAGGGGAGGCCGAGAGAGTCGTAC

Explanation	CPC Score
noncoding	-1.00488

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0437300.2	9	13570135	A	G
Osa09LNT0437300.2	9	13571190	A	T
Osa09LNT0437300.2	9	13569306	T	C
Osa09LNT0437300.2	9	13569674	C	G
Osa09LNT0437300.2	9	13569848	C	T
Osa09LNT0437300.2	9	13572136	A	G
Osa09LNT0437300.2	9	13572882	G	T
Osa09LNT0437300.2	9	13573010	G	C
Osa09LNT0437300.2	9	13574815	G	C
Osa09LNT0437300.2	9	13574855	A	C
Osa09LNT0437300.2	9	13571740	T	A
Osa09LNT0437300.2	9	13569690	G	A
Osa09LNT0437300.2	9	13574338	C	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0437300.2	osa-miR5534a	Translation	5.0	19.475	1	21
Osa09LNT0437300.2	osa-miR399e	Cleavage	4.5	13.258	1	21
Osa09LNT0437300.2	osa-miR399f	Cleavage	4.5	13.258	1	21
Osa09LNT0437300.2	osa-miR399g	Cleavage	4.5	13.258	1	21
Osa09LNT0437300.2	osa-miR156k	Cleavage	4.0	18.542	1	21
Osa09LNT0437300.2	osa-miR1854-5p	Cleavage	4.5	7.249	1	21
Osa09LNT0437300.2	osa-miR2098-3p	Cleavage	4.0	15.204	1	20
Osa09LNT0437300.2	osa-miR2100-5p	Translation	5.0	14.207	1	22
Osa09LNT0437300.2	osa-miR2106	Translation	4.5	23.552	1	21
Osa09LNT0437300.2	osa-miR2872	Cleavage	4.5	22.428	1	21
Osa09LNT0437300.2	osa-miR2926	Cleavage	3.5	22.363	1	20
Osa09LNT0437300.2	osa-miR2926	Translation	4.5	20.248	1	20
Osa09LNT0437300.2	osa-miR5161	Cleavage	4.5	23.764	1	20
Osa09LNT0437300.2	osa-miR5339	Translation	5.0	13.857	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0437300.2	9	qLG-9	Physiological trait	Germination/dormancy	G103	R1751
Osa09LNT0437300.2	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0437300.2	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0437300.2	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus