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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0438000.1

GCCCAACAACAGTCTTATATGTGTGCATATATCGAAGCGTTGATGCACGCAAGCTGGTCCGGTTTATGTTATTTCTTACATAAGATATTTTTACTCCATACTTTTGTTTAAAGAATCATTCAAAGGATTTCATGGAAAAAAAAAAGTTCCGCCAAGTGCCAAGGATCGACATTTTGAACTAGAAATGTTAGATGGCACCGGATTATTTTTTTCCCCCTGGTGCTCTTACAAATGGAGAGAATGGAATGAGTAGAATTGATTGCACGACATTTATTACATAAATAACCGTTGATACTCGGTACGTGTCCGGTCGTCTACCAATGTCGGCGATGTAGCAGTAGACCTTTACTGATGGTTGGCGTGTG

Coding Potentia
Explanation CPC Score
noncoding -1.04367
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0438000.1 9 14346146 A C
Osa09LNT0438000.1 9 14346391 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0438000.1 osa-miR2926 Cleavage 4.5 20.943 1 20
Osa09LNT0438000.1 osa-miR5148a Cleavage 4.5 10.508 1 24
Osa09LNT0438000.1 osa-miR5148b Cleavage 4.5 10.508 1 24
Osa09LNT0438000.1 osa-miR5148c Cleavage 4.5 10.508 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0438000.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
Osa09LNT0438000.1 9 RL10(t) Morphological trait Culm/leaf nan nan
Osa09LNT0438000.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0438000.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0438000.1 9 qLG-9 Physiological trait Germination/dormancy G103 R1751
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus