>Osa09LNT0438200.2

GAACTAGAAATGTTAGATGGCACCGGATTATTTTTTTTCCCCTGGTGCTCTTACAAATGGAGAGAATGGAATGAGTTGCACGACATTTATTACATAAATAACCGTTGATACTCGGTACGTGTCCGATCGTCTACCAATGTCGGCGATGTAGTAGTAGACCTTTATTGATGGTTGGCGTGTGGCTCATGATGCGATTACCTGCATAACAGCCACTTTGAAGGATTCATCCATCAACTTAAACTTGTCAGCTGGGGCGGCATCGAGGACAGCTTTAGCTGCTTTCTTGTAGGCAAGTGAAGTTGCAGCAACTTTCTTCTCATCTCCTTGGGCCATCCCGAGAGCAGTTATGGCGAAGATTCTCCGCTTCCACGTGGCAGCTTCAACTTCATCCTTTTTTGCTGGTGGGGCAGCAGCCACAACGGAGTCGGCGGCCTCGTTGATGGCCTGAGCTGCCTCATCCAAGCGCTTATCGACAGGGGCGAGGAGGGCCTTGTTGAAGCTCTTCTCGACGGGGGCGTCGCATTCCACTTGCACTAACACGGCCGATGCCGCGATGGCTGCAAGGAGTAGGGCGACGGCTTTGGCCATTGCTAATGAACTGAACAGGGATCTTTCAATGTTGGAAGATGTTGCTACAGCGTGCGGATTTG

Explanation	CPC Score
noncoding (weak)	-0.913136

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0438200.2	osa-miR2926	Cleavage	4.5	15.902	1	20
Osa09LNT0438200.2	osa-miR3980a-3p	Cleavage	5.0	24.748	1	21
Osa09LNT0438200.2	osa-miR3980b-3p	Cleavage	5.0	24.748	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0438200.2	9	qLG-9	Physiological trait	Germination/dormancy	G103	R1751
Osa09LNT0438200.2	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0438200.2	9	RL10(t)	Morphological trait	Culm/leaf	nan	nan
Osa09LNT0438200.2	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0438200.2	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus