>Osa09LNT0438200.3

ACTCCATACTTTTGTTTAAAGAATCATTCAAAGGATTTCATGGAAAAAAAAAGTTCCGCCAAGTGCCAAGGATCGACATTTTGAACTAGAAATGTTAGATGGCACCGGATTATTTTTTTTCCACCTGGTGCTCTTACAAATGGAGAGAATGGAATGAGTAGAATTGATTGCACGACATTTATTACATAAATAACCGTTGATACTCGGTACGTGTCCGGTCGTCTACCAATGTCGGCGATGTAGTAGTAGACCTTTATTGAAGGTTGGCGTGTGGCTCATGATGCGATTACCTCCATAGCAGCCACTTTGAAGGATTCATCCATCAACTTAAACTTGTCAGCTGGGGCTGCATCGAGGACAGCTTTAGCTGCTTTCTTGTAGGCAAGTGAAGTTGCAGCAACTTTCTTCTCATCTCCTTGGGCCATCCCGAGAGCAGCAAAGGCGAACATTCTCCGCTTCCACGTGGCAGCTTCAACTTCATCCTTTTTTGCTGGTGGGGCAGCAGCCACAACGGAGTCGGCGGCCTCGTTGATGGCCTGAGTTGCCTCATCCAAGCGCTTATCGACAGGGGCGAGGAGGGCCTTGTTGAAGCTCTTCTCGACGGGGGCGTCGCATTCCACTTGCACTAACACGGCCGATGCCGCGATGGCTGCAAGGAGTAGGGCGACGGCTTTGGCCATTGCTAATGAACTGGACAGGGATCTTTCAATGTTGGAAGATGTTGCTACTGCGCGCGGATTTGCTGTGT

Explanation	CPC Score
noncoding	-1.00235

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0438200.3	9	14330851	C	A
Osa09LNT0438200.3	9	14333091	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0438200.3	osa-miR166l-5p	Cleavage	5.0	20.599	1	21
Osa09LNT0438200.3	osa-miR2926	Cleavage	4.5	21.554	1	20
Osa09LNT0438200.3	osa-miR3980a-3p	Cleavage	5.0	24.201	1	21
Osa09LNT0438200.3	osa-miR3980b-3p	Cleavage	5.0	24.201	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0438200.3	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0438200.3	9	RL10(t)	Morphological trait	Culm/leaf	nan	nan
Osa09LNT0438200.3	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0438200.3	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0438200.3	9	qLG-9	Physiological trait	Germination/dormancy	G103	R1751

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus