>Osa09LNT0438600.1

CAAGTAAGTAAAATTCATTCGCAATTCAGAGAAGTGAACAAAAGAGCGGATCAAATATGTCTCAGCAACATTTGACATCAAGTGCATCACAATGGTAGACGGATTTCAAGTACTCCAAACTCAGACAGTTATACTAAAACATTCAGCTAGAAGAGGCTAGACCATTGATCATCACCATCAACAAAAATGTTTTCCTTGTTTATAGCACATCGCCTTGCTTCCACTTCCAAGAGTTGTCTACTTTGAGGCTGACTTGTCCTTGGTTTTCTGTATTTTCAAGACTTTCTTCACAATCTTCTGCTCTTCAACCAAGAAAGCACGAATGATCCTTTCCCTAACTGCAGTTCCAGAGAGCACTCCACCATAGGGACGGTTCACAGTTCTGCGGTTCCTAGACAACCTGGATCTCTTGTACTCAGCAGGCCTGAGATGGGGAATTCCCTGGATCTTCTTCCCGGTCACGGGGCACTTGGGCCCGCTCGCCCTCTTCTTGGTGTACTGGTACACGAGCTTGCCACCTGGAGTCTTGACGACCCGCGTCTGATTAGACTTCGTGGCATAGCTGTGCCTTTTGCGGTACGTCAGGCGCTGCACCATCTCGCCGTCGCCGCCGCCGCCGCCGCCGCGTAGTCGCCGATGGATAAACCCTAGAGGAGGAGGAGGAGGAGGAGGAGGAAATG

Explanation	CPC Score
noncoding	-1.08276

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0438600.1	9	14691673	T	G
Osa09LNT0438600.1	9	14692124	G	T
Osa09LNT0438600.1	9	14693108	C	G
Osa09LNT0438600.1	9	14692181	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0438600.1	osa-miR5147	Translation	3.5	13.766	1	21
Osa09LNT0438600.1	osa-miR5497	Translation	5.0	13.613	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0438600.1	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0438600.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0438600.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0438600.1	9	qLG-9	Physiological trait	Germination/dormancy	G103	R1751

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus