>Osa09LNT0438700.1

AACCAAATGTGCCATTCTCACATTTTCAATAGGTTCCAAGGTATCCTTACAAAAAAGGAGATGGGTATATATGGATGTGTTCATGTGTATGATAGCATTTCTACAGCCTGGTCTGTATTTTGCCTCCTCTGGGTAAAAGCTGAGAACTCAACAACCAGTATGAACCAAAATCGGGGATGACATACCTACAATGGAAGGCACCCATCGACCATCACCATCCACAAGCAAATTAGGCTCAATCAAAATCTTGGGAGCAGTCGAAGTCGTCCCCTTCACGGGGTTGGCCGAAAGAACTGTACGCCAGATGATCACCCTTCTTCATCTTGCCACCCAGGAAGCTCTGGGGGTCCTTGTCATCGTGCTGCAGCCTCCCAGTTACCTCCAGGCACAGGCCATTCTTGGTGAGTCTCTTGCTCTGTCGAGCTCTGTCAGTTTTTGGCTTCACTGGCCCTGTTTCGATGAACACGGGCTGCTCTCTGATTGTGGGGTTGGCTTGTATGCGGTGGATCTGATCCTTCTCTTCAGGTGGTCCCAAGATCCGGTGCTCGGATTCCAACACGGTGGCTCCATCCTTGTTCAAAATTACCTTGCGGCCCACCAAATCAAATGTGACGACCACTTTCCCTTTATCCTTTTCAGCTGCTTCCTGAGCTTCCCCGTGCTGCTTCTTTAGGTCTGACTTTTCCTTTGAAGAAAGCCAACTATTTCCTTCCATTTCAAAGTAGTCACTTTGATCATCATAAACTTTAGTCCTTGCTGCAGAGTTTCTGTCATAGTCAACAAGCCTCTTTGCATATGCTTCAGCTTCAGCTTCTGCTTCCGAAAGAGGAATTTCAACATCACTTAAACCAGCATATGTGCTTCCTTCCATTAGAACAAGTGCACCACAGAAACTGCATGGTCCCTCACCCTCTTGTTCACACACAATTTTGCCACATGATAAGCAGTTGCTGACAAGGTTGTGCTGGCGTGCTTGGCATGAACAAGGTTTCCCCTGCTTGAAGACAATAGAACCCTTCGCTGCCTCAGCAAGGGAGATGGCCTTTACTGCTTTCTTTTTTGAACCTCTCTTGGAGGCAACTCGGGGTTCAGTAGTCTCTGGTTGATTCTTGGAACTCTGGCCAGAAGAAGATGCTGCTGCATCTTTTTGTGTGCGTGTCTGCTTCTTGGTTTGGGTAGGCCCAGCTTCAGCAGAAGGCTTCACATAAGGCTGAAGATTTGATGATTGTAGGTTTTCATTGCCCTTCAATGGATCAATGTAACCCCTCCTCTGCAAGTACTCCTGAATAAGGTCCTGAGCAGCTTCTACTCCAATAATATTCGCGAGGTAGTCAGCGGCGTCGGGCGGAGGCGCGAGCTCGCAGAAGGAGACGAGGCCCGAGATGAGGTCCGCGTCGAGCTCCAGCGCGCCACCCATCCGCTCCCGCAGCTCCTGCAGCGCGCCCTTCAGCCACTCGCCGGACGTGCTCGCCGTCGCCGCCATCGCCGCCGCCGCAAGAGCCCTCTCTACTATGGAGAAGAAGCGGTGTGGTTCACTTTTGCAAATTCCACCCTGAACCTATACACAATTCCGGAGAAGGCTTATCACTTCGATTTTTATTTTAG

Explanation	CPC Score
noncoding (weak)	-0.501358

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0438700.1	9	14677563	A	T
Osa09LNT0438700.1	9	14678203	A	G
Osa09LNT0438700.1	9	14678645	A	C
Osa09LNT0438700.1	9	14679112	C	T
Osa09LNT0438700.1	9	14680009	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0438700.1	osa-miR5526	Cleavage	4.5	13.386	1	21
Osa09LNT0438700.1	osa-miR5820	Translation	4.5	14.502	1	21
Osa09LNT0438700.1	osa-miR5083	Cleavage	4.0	18.168	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0438700.1	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0438700.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0438700.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0438700.1	9	qLG-9	Physiological trait	Germination/dormancy	G103	R1751

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus