Transcript

Sequence

>Osa09LNT0438800.1

CTTTTCTACTCCCTCAAAAACATTTCGTCGAACACCTTGTGGGCGTGCTGCACCTTCTTCTCCGCTCCACCACCGCAGCCGATCTTCGTCATTCTGCCGTCTCTCGATAAACACAGAAGATTTCCGATTTCCAAAATCGGGGGTCTACAATCGAAGATGAAGATTGTCGCGGAAACAGAGTAAGAATCGGCTGAAGTCCGGATCGACTACGATTGGATCGGCTGAGTTGGAGTCAGACTTGGTTAGGTGATGCAGCCGATTCCAACAATACGACTTGGTGTACGACATCGGGTTGGGTTGAGGTGCTTCAAGATGATTGCCATGCATGGATAGAGTTCTGGGAAGGCAATTGTATCTATTAATTAAGACATTTTATGTAATTTTCTTAGAGATATGCTTGGGCAAAAGTCTGCCGTAAAGACTTGTGGTATCTTAGATTTTGTTAGAGATAATAGTCATGTCTGGTATGGACATATCTTGTAATTCTCGGGTATGAATAGACCCCGAGCCCTATGTAATTAAACACACACGTTCAATACAATTTCGGCGCATCGCCACCTTTTTG

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.671175

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0438800.1	9	15102451	T	C
Osa09LNT0438800.1	9	15102663	A	T
Osa09LNT0438800.1	9	15102664	A	G
Osa09LNT0438800.1	9	15102735	T	C
Osa09LNT0438800.1	9	15102792	A	G
Osa09LNT0438800.1	9	15103390	C	A
Osa09LNT0438800.1	9	15103407	A	G
Osa09LNT0438800.1	9	15103426	T	G
Osa09LNT0438800.1	9	15105124	T	C
Osa09LNT0438800.1	9	15105644	C	T
Osa09LNT0438800.1	9	15105652	T	C
Osa09LNT0438800.1	9	15106323	C	T
Osa09LNT0438800.1	9	15106324	T	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0438800.1	osa-miR5542	Cleavage	5.0	10.894	1	21
Osa09LNT0438800.1	osa-miR5514	Cleavage	4.0	18.748	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0438800.1	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0438800.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0438800.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus