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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0438900.1

ATCTTGTACGGCTGCTTCCGTGGGTTCACCTCGTCAGAGCACCTGGAACAACCATGGCAAGCTTCAGCAATGGTGCATCATACTGTGAGGTGGAAGTTATAGGTGCCGGGGGCAGGAGCATACAAGTGCTAAATGCTTAACTAAAGCAATGAAAATGTCCTAAGCATATCAAGAGATGGATTACAGATCACTAGCACACATACAGAAACTCACCTTGTGGGCACAGGATACTCGGGGAAGAGCTTGCCGAGGATGTGGACGACGTCCTCACGGTGCAGGACGC

Coding Potentia
Explanation CPC Score
noncoding -1.18588
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0438900.1 9 15076809 G A
Osa09LNT0438900.1 9 15076943 T C
Osa09LNT0438900.1 9 15077228 T C
Osa09LNT0438900.1 9 15077274 G A
Osa09LNT0438900.1 9 15077774 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0438900.1 osa-miR2098-5p Cleavage 4.5 24.092 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0438900.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0438900.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0438900.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus