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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0439000.1

CAGAACTCAAAATCACCCGATCGGTCACAATTTGCAGTTATTGTACAATGTAAGCCTCCACTGCAGCACGCAAAATTGCCAAAGGGGGCAAAAACAAAGCTGCTACCTGATGTTTAACATGAAGTGTACAAGGAACAAATATGATTGGGAAGGGCGGTACTGTTCGTGAGTTGGTACCAACAAGACCTTGCCACTGCATCATTTGCAAAAAGCGTGCAGTCTAACACCCAACGTGAGGAGTTCGACAAGGACCGATTTAGCCCACAGCACCCAGAAAATTTAGTAGGTTTGTTTCGTATCATGCAGCTTGCGTGCGAATGTTGCAGCCACGAGTAACGGGAAAGCGATCGTAGCATCACAGTGCACCTTGACAGGTTTGGCTGAACCCTTTATCTTTCCCCATGAAACTGCTTCATCAGGCTGTGCTCCAGAATCACTGCCATCAAATTCTTGAGCTGTGTTGATATAGACTGCAAAATCTGCACCATTGCGAAACATATTGGCGTTGCATATATGATGCTTCGGTAGACCTCCACCAAGAACTATAATCCCGGTCTTCCTTGGGGTTGCATGAATGGCTTCCCCATTCATCAATCTTATATCTTGTACAATGTCAATAATTAGGCCAGGATTGCGAACTGCATGACAGAATAGCATGTCTCCAAGTGATCCATCAGTCAATGCTGGGCAGTATACAGGAATATTGTTCTTATATGCCCAATAAAGGTAGGAACTTTCATCGTTTATTTCTTTGCCAAGACGGCCAATGACCTTCGATGGTGTCCAAACATTCTCCCTGGATTGCTCTTGTAACATCTGGTAAAAAAATTGGCATGATCCAGTTCTCAAACTTGCAGTAGTTATCATTAGGAACCAATAGATTTCCAATCCGATTCAATCCCTTTGACCGCAGCAGCGTTCCAGGTAAAGAAAAATCCCCTCATGTGATGCTGAACTAGAAAACGGACAACATCCCGAATGCCAGAAGAGACAAGGTTTGAGGTGAATCCCAGGAATATTTTGCACTTCACAGATTCTCTATATGTAGGGTCAAGCTCAGGTTCATCACAGTCCTCACGTGGCTTCTCATGGGACAGCCTCCATTCTAACATCTGGTTGACGACGTCAACGGCGTCGCCGAGGTTAGAGGCCTGGAATCCAGTGGTGGCGAGCGACGCGAGCATCCCGGAGAGCCCGAGTCCGGCGTCGTTGAAGTCGGCGCCGGCGATCCTCGTGAACCGCCCCTCGTCGAGGGACTCCGAGGGCTTCAGCACGATAGAGCGCACGCCCTGCAGCGCGTCCATGTCGCGCGCTCCTCCTCCTCCCGAGCCGCCGCTGCCTCCTTCCCAGGCCATCGCCCGCGAAGCCGCCGCCGCCGCCGCCGCGAGCTATCAGCTTCGAATTACTTTTTC

Coding Potentia
Explanation CPC Score
noncoding -1.13497
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0439000.1 9 15207049 C G
Osa09LNT0439000.1 9 15205873 A G
Osa09LNT0439000.1 9 15204569 C T
Osa09LNT0439000.1 9 15205083 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0439000.1 osa-miR166g-5p Cleavage 2.5 21.177 1 21
Osa09LNT0439000.1 osa-miR1847.1 Cleavage 2.5 15.885 1 21
Osa09LNT0439000.1 osa-miR1872 Cleavage 5.0 11.115 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0439000.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
Osa09LNT0439000.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0439000.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus