>Osa09LNT0439100.1

GCTTAATGACAAGAATTGCTTCTGATTCTCGAGCAGATAAACCATTAACACAAGCTTTGATGTTTTCCTGACTTTGTGTGGTGTATTTCCAGTCATTAAGTTCTTGGGGAATAATTCGTTCACTCGCCAACCCCATAAGCTGTTCTTGATCTGATTTTTTCATCGTATTTGGCTTTCTTCGGCTGGTAACATGTAGCAAAGCATGTGAATCTGGAAGAGAATCATCTTCACAGGATAAACTACCAGATGAGTAAGCATCAGTATAATGTTTAATACTGCTTTCACAGCTTTCTTGTATTAGCTCTTCAAAATGCAGTGGCATCTCCATATTACGTCCATGCCTAACTGTGCTGCTCGGAGGGTCTTCTTGCACAGACTCTAAAACCTGACCATCAAATTGTCTAGAGAGTAGTCCAGGACACCATGTCAACCGTCTTTTGTTCTTACTAGAAACAGTAGTTCTATCATCCCTTTCTGAATTTAATACCAATGAACTAAGGTTTTCAATTTTCTTTGCTTGCTCAATCAACCTCTTATCACGCTGTTCTTTGGCTTTCTTTTCCTCCTCCAGCTCCAAAGAAATTCTCTCCTTTTCCAGTTCACTCT

Explanation	CPC Score
noncoding	-1.27043

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0439100.1	9	15217518	G	A
Osa09LNT0439100.1	9	15217968	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0439100.1	osa-miR5813	Translation	5.0	13.434	1	22
Osa09LNT0439100.1	osa-miR396a-3p	Cleavage	4.5	12.601	1	20
Osa09LNT0439100.1	osa-miR396b-3p	Cleavage	4.5	12.601	1	20
Osa09LNT0439100.1	osa-miR396c-3p	Cleavage	5.0	12.601	1	21
Osa09LNT0439100.1	osa-miR1857-5p	Cleavage	4.5	14.539	1	21
Osa09LNT0439100.1	osa-miR5508	Cleavage	4.0	18.557	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0439100.1	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0439100.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0439100.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus