\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0439800.1

CTTGCTATCAAAGGTGATTTCACATTTTCACTCATAAGCTGGCTTTTTCATATTATTCTTTCCCTTAAGAAAACGTATAGTATTTCTCTAGTTTGTACTCCCTCCAGTCATAAATATTTCATGTTTAGGACAATATTTGGTCAAACTTTTGAAACTTTGACCATCAATAATTTCCAAAATCCAAATGCTTATCTTAAAAAGGAAAAAAAATGCCATGTATAGATCTGCCTTGAAAAGTACTACAATAATATCATAAAGTAATTATATTTTGCAAACTCATTCTAATATAAAATTTATGGTCAAAGTTTGAAAAGATTGACAGGATGTTGTCCTAAGTGTCAAATATTCATGACAGGAGGGGCTATATATAATCTACGCAATTGGATACATAGTTTTACATTGCGAATATGCACTGAAAAGCCTAACCAGTTGAATTTGTGTACATTTACACTCAAACCCT

Coding Potentia
Explanation CPC Score
noncoding -1.1105
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0439800.1 9 15600410 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0439800.1 osa-miR6248 Translation 4.5 9.774 1 21
Osa09LNT0439800.1 osa-miR437 Cleavage 3.0 15.975 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0439800.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0439800.1 9 nan Morphological trait Panicle/flower RM257 RM566
Osa09LNT0439800.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
Osa09LNT0439800.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0439800.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus