>Osa09LNT0439900.1

GGCCCCAAAATAAATCCCGCATTAACCACGAAATCAATCCACATCACAAAACAATAAAGTCACAACCAAGAACAATGAATATTATCCAAGAACCCGAATCAACATCACAGACAATGAACTCACAACCACGAACAACGAGAAGTCTGACTCCACCATTACTCATGTCGCTGTATGCCAGATCCGTCAAGGGAGAGGCCGACGCCGCCACAGCTGCCGGATCGGGAGCCGCCGCCGCCAGCCACCGGATCCGCCCGCGGGAGAAACCGCTGCCACCGCCCGTCATCGCCGCACATGGAAGAGTCCACCGCCACCCGTAGTCATCGCACATGGGAGAAGCCACCGCCACCCGTCGTCGCCGCACGACGGGAAAAGTCACCGCCACCGCCGCCCGTGGTCGTCGCACGCGGGAGATGCCACCGCCGCCCGTCGTCGCCGCACGATGGGAGAAGTCACCGCCATCACCACCATACGCCATGAGGAAGATGGGGGGAAGGCCGGCGAGGCGAGTGGAGGGGAGGGCCGGTCGGAGAGGGGAGAGAAGCGGTGGGGAAGAGAAGTCAGTGCTCTCGGTGGGGGTGAGAAGCCTAAGATCTGAGGATAAGATCGATTCACT

Explanation	CPC Score
noncoding	-1.09625

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0439900.1	9	15712334	A	G
Osa09LNT0439900.1	9	15712490	A	G
Osa09LNT0439900.1	9	15712524	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0439900.1	osa-miR169i-3p	Cleavage	3.5	22.856	1	22
Osa09LNT0439900.1	osa-miR3979-5p	Cleavage	4.5	17.899	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0439900.1	9	nan	Morphological trait	Panicle/flower	RM257	RM566
Osa09LNT0439900.1	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0439900.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0439900.1	9	qSB-9	Resistance or Tolerance	Sheath blight resistance	C472	R2638
Osa09LNT0439900.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus