Transcript

Sequence

>Osa01LNT0041100.1

CCTTTTTGTCCCCTCTTGTCACATTACATGACATTGGAATATAAAATCTCCAGATCTCTGCAGGGCCACACACTAGTACTGTCGCTAGCCATGGCCCTGGTAGTATTAACTACCACTACGTACGCATGTTCTTGTGGACATGGATTGGAGTGACCTGAGAGGCTGGTGAGCCCTTACAAAAATGGTGAAGCACCCTAATC

Coding Potentia

Explanation	CPC Score
noncoding	-1.34162

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0041100.1	1	32956333	G	T
Osa01LNT0041100.1	1	32956371	C	T
Osa01LNT0041100.1	1	32956467	A	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0041100.1	1	gpy1	Others	Others	RG541	RG101
Osa01LNT0041100.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0041100.1	1	qCC-1	Physiological trait	Source activity	RG541	RG101
Osa01LNT0041100.1	1	An10	Morphological trait	Panicle/flower	nan	nan
Osa01LNT0041100.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0041100.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0041100.1	1	qLRC-1	Resistance or Tolerance	Drought tolerance	RM237	RM302

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus