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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0440200.1

GCTCTCTCTCTCACACGCAACTATCGACAGCCTGGACATGGTGCTCATATGGCCCATTCCGGCCCACTCACTCTAGGATTACATACTCGGTGCCTAACAGGTCTTCCTTCCTTAGTCTGCTTAACCTCCTTGGTCTTGACAGTGTTCTGTAGCTCATCCGGTATAGCTGTGCTGCTGACAACCCCCTCTCCTTGAGAAGT

Coding Potentia
Explanation CPC Score
noncoding -1.08377
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0440200.1 9 15975332 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0440200.1 osa-miR166a-5p Cleavage 5.0 13.724 1 21
Osa09LNT0440200.1 osa-miR166c-5p Cleavage 5.0 13.724 1 20
Osa09LNT0440200.1 osa-miR166e-5p Cleavage 5.0 13.724 1 21
Osa09LNT0440200.1 osa-miR815a Cleavage 4.5 13.036 1 21
Osa09LNT0440200.1 osa-miR815b Cleavage 4.5 13.036 1 21
Osa09LNT0440200.1 osa-miR815c Cleavage 4.5 13.036 1 21
Osa09LNT0440200.1 osa-miR1883a Translation 5.0 10.914 1 24
Osa09LNT0440200.1 osa-miR1883b Translation 5.0 10.914 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0440200.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
Osa09LNT0440200.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0440200.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0440200.1 9 nan Morphological trait Panicle/flower RM257 RM566
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus