>Osa09LNT0440300.1

CCTTTTAACTAGACCATTTGATTGCGTACAACATCCAACAATCCTTGCAAATCCAAGCCTAACTTTTCATCACACTATTTTGCATTCCTGTATTATCTTACACCCACCCACTGTCACCATCAAGAAGAAAGCTAAAAAATGACAACACCAAAAACTAAACCCAATCAAATGTGGCATTCTGCCACACCCTCACCAGCATATGTACATGCATGACCTTTTTCTCCTACTCTGTTCCCCACCTCTATTCCTATGCTCCCCTCTCCTTGTTGTAGCTCGCCGTCCTCCGGTGTCGTCGCAGCGCACCGGTGTACCCTCCTCCGATGACACCATCACGGTCATGCAGCACAATGCCAGCGTGAATCGCCGAGTCTGGGTACTTCTGTCGATGCCTGTCCTGATGGTTTTGGTGAGTGTTTTTCTTCTCCTCAACCTCAACCTTCATGTCCACCTTCATGTTAACCACCTTCTCGTCCTCCACAATGACAGTGAAGACAAATGGGCCAACTGGGAAGAAGTCATCCATGCCAAGCACAGGCTCCAGGGCTTTGACAACCTCCCTCATTGTGGGCCTGGACTTAGGGTTCTCACTCAGACACTTGTACGCCACCAATGCCGCCACCTCAGCACCCTGGCACGAGTACTGGCACTCGAGAGCAGGGTCCATAACCTTGTACAATTTATCGGCCCACTTGAGGTATGGTCTAGCCCAATCCACCAGGCTTTGTTCTCTCGGGCGTCGAGAGCGGTCCACTGACTTTCGCCCCGAGAGAAGTTCCAACAATACCACTCCAAAACTATACACATCGCTCTTAGCTGTTAAATGCCCCGTCATGATGTACTCAGGAGCTGCATATCCATGTGTTCCCATGACACGTGTCGTTACGTGCGTAGCGTCACCCTGGGGCCCATCCTTAGCTAGGCCAAAGTCGGACAGCTTGGTATTGTAATCCTGAAAACACACAAGTTGAGATTTAGTAATGTGAATGGAAGTGGGATATCAAGATATCACTTGCAAAGCTATTCATGTATTAATAATCCGTGGGCTACTTGGGTGAGGTGGATAATGACGGCTAGATATTTTTGATTAGGTGAATGATGTGAGGGCAGGATTGCTAGGATTTCTGAAGTTTGGCATGCATCTTCCAAAGTTCTAATCAGCCAAGTCAAGGCTTTTGCCCATAACGAACTGGGCCACTGCAAGCATAGTTCAGAAACGTGTGGCGCAGCTGGATATTTTTGCACGGTCATTGGAATGATTCAATTGGTCAAAAAGTTTAAATTCTCGATCAAAAAATGAAGTCATTTTTTGCGAAGGTTGTTTGTGGCAGCCTTGAATTTGGGCCCCAAACATTTACTAATTTCGCATTCATCCAGAAGTGACGTGTGCTGCCTGACTGACCCCATTTGTTGGTAACTGAACTTACTGTTCCCAAATGAAAGGGACATTTCAGAAACCGTGTCATTTCTTGACAATGTGGTGTTTGAACTTTGAACTGTAAGTTCTAATCTACCATTGGAATAAATGAATAACAATTACACTACATTGGAACTGAATTGTAGGGTGGCTCACCAGGTCAAGTAAGATGTTGGATGCCTTGAAATCGCGGTAGATCACCGGCGGATCGGCATCATGGAGGAATGCGAGGCCTTTCGCCGCGCCGAGGGCAATCTTCATCCTTGTCATCCATGGAAGAGAACCATTGACAGTTTTGAAGAGATGCTTCTCCAAGCTCTCGCCGCTCATGTACTCGTACACCAGCATCCGATGCTCGGCTTCATAGCAGTAACCAATCAATTTCACCAGGTTCTTGTGCCTCAGCTGCCCAAGGAAGAACACCTCGGCCAGCCACTCCTTGTGGCCCTGCGTGCCGCAGTCCAGGTCGAGGTACTTGACGGCGACGTCCTGCGCGGCGAGGCCCGGGCGGAGGCCGTCGTCGACGGCGCCCTTGTAGACGGGGCCGAACCCGCCGCAGCCGAGGTAGTTGGCGCGGGAGAAGCTGCCCGTCGCGGCGCGGAGCTCGGCGTAGGTGAAGGCGTACAGGTTCGAGCCGGACAGCGTCAGCGACAGGTCCTCCGGCGACAGCGTCCCCGACGAGCTGAGGCTCGTGAACGACATCCTCGACGACGACCTCGGGCTGTCCCCCCTGCGCGCGATCCTCCGCCGCCTCGGCGCCGAGTCGTCGTCGTCGTGGACGGCAGCGCCGCCGCCGCAGCACATGAAGGACCTCCAAGATTGCGCGGCCATGGCAATTGAACCAAAGAAAATTTCAAAACAACCCGAGAGAGATCAGAACCAAGAAATGTGGCTAGGATCCGGGAAGAGCAGCTCGAGCTAGCAGAGGAGCTGAGAGATGGAGATGCCGGAGAGGGAAGAGGAGGAGGTGAGCCTT

Explanation	CPC Score
noncoding (weak)	-0.573011

Transcript ID	Chromosome	Locus	Ref	Alt
Osa09LNT0440300.1	9	16422984	A	G
Osa09LNT0440300.1	9	16424464	T	C
Osa09LNT0440300.1	9	16423331	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0440300.1	osa-miR396a-5p	Cleavage	5.0	18.357	1	21
Osa09LNT0440300.1	osa-miR396b-5p	Cleavage	5.0	18.357	1	21
Osa09LNT0440300.1	osa-miR417	Translation	4.0	13.839	1	21
Osa09LNT0440300.1	osa-miR1431	Cleavage	5.0	20.696	1	21
Osa09LNT0440300.1	osa-miR1442	Cleavage	4.0	18.765	1	20
Osa09LNT0440300.1	osa-miR2095-3p	Translation	3.5	19.47	1	20
Osa09LNT0440300.1	osa-miR2102-3p	Cleavage	4.5	24.834	1	22
Osa09LNT0440300.1	osa-miR2104	Cleavage	4.5	5.021	1	22
Osa09LNT0440300.1	osa-miR5071	Cleavage	4.0	21.829	1	21
Osa09LNT0440300.1	osa-miR5519	Translation	4.5	22.905	1	21
Osa09LNT0440300.1	osa-miR5519	Translation	5.0	19.745	1	21
Osa09LNT0440300.1	osa-miR5523	Translation	4.5	14.885	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0440300.1	9	nan	Morphological trait	Panicle/flower	RM257	RM566
Osa09LNT0440300.1	9	rdw9	Resistance or Tolerance	Drought tolerance	R79	R2638
Osa09LNT0440300.1	9	qSB-9	Resistance or Tolerance	Sheath blight resistance	C472	R2638

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus