© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0041300.2
GGCACATAATATGACCACCTTGTATATATACGGAAAATTTTATCCAGATACACGTGTAACCTATTATTTACGCAATTACACTGTCTGCAAAACAGCTCTATCAGGTTACATTCTCAGAACTGACAAAATTGTTCCAGCTGCATGATCTTCAGTGCTTGGCACTCATGCAGCATTTTGCAGACTCACTATTAACCTCTCTTCAAGGCAAGTGCTTTATCAACATTCTATTGGTAAACCATTTACCTGAGACTTTTGTTAACAGAAATATCAAACCATGTCTGACTTATCTTGCTGGCCTGCGTGTTGAACATGCTATTCTTGAAGCTTTTTTGTCTTCCTTTTTGGCATACCACTCACCATGTCTGACTTATCTTGCAATCTTGCGCCTTGCAATCCATTATCCTTGCAGAAACGGACTGCCAAAGATTGAGAAGGGGCAGCTGGGGGGAAATCTTCAGCTGGCATTGCAAATGGACGAACCATTTTATCAAATTTGTCCAAGGTGAGATATGATCCAACTTCCTGCAATCTTTCTGGCTCCATAATTTTCATAGTGTGATCATCAGGTAGCAATGAATCTTTTCCATGTTCGCTCTGTAAGGAACTTATATCTGCACCACGACTATATGTCATTTCTATGCGAAACCTTTTTGGGTCTTCCAAAGAAACCTCTGTATTCTCGAACATACGCAATACAATGTAACTCATGTAGTCAAGTTCCCTTGTTTTAAACAGATTATCTAGAGCATTTTTGCAAACAAGACTTTCTTCTCCATCCATAGATTCATCAAAATTGCAGTATCGAAGTACATTCATTAGAGAATGTATATGTGATTCTGATGTAAAATAGAGCCTTGTTCGAACACGTCGTTCAGGTTCCATCACATTGGCATATTTTGGATCCAAGCAGTATTTGGTTTCTTTGTGCGAATCATCAAGATCAATTGACTTCTTGTTTGAGTTAGGTCTATCAAAACCCTCATTCTTAACATCCCCATAGTAACCCCTATCCTTCCGTTTTGAAGAAGGCACTATTGTTGGATCATGGCATGCATTAGATTCACCACCAGCAGCAGCAACCTCTCGTCTGGTGTTATGCAGGTCAATCAGAATCTTGCCCAACAAACGGCGTGCAATCTGAAGAAAAGGACATGAGAAACATCATAAGTTGCTTGTGACTAAAAAACAAAACAGTGCCAAATAAAAGGGCTAGCCTCTAGGAGAAAATTGGGTACTACATATTTTCTGCAACAAATTCCTTTAGCATCCTTCATTTCTAGAAACAAAATCTCATTTATGTTAGTTTTTCGGATAAACACTACATAATGAAAACAATGAATATACAGGACGCAACTCATAACAGTTTCTTTTCCAGTTTTCAAATATATTTACACACCAGTACCTTTGAACCAATTTTGAGTTTCTGCTTCGCATTTATTCCATACTCATTTGGAATTACACCATCAGCTAGTGACTGAGAAACTCTGAAGAGATCACTCAAACCATTAAGTTTGAGATGTGAGTTATGAAGGAGGTCATACTTGCAAGAGTCATATATATCAGGTATTTGCGTAGTGTCAAAACGTTTTTTTCTTTCGTTGTAGAGATCCCTCTCTAGTTTCTTCCAACGGGCAAACATCAAAAGGAAGCTCTCGCTGCCACAAGGCAATCCAGAAGCAATGCGGTCCATATCAATTGCTGTTTTCCCTAGTGCCTTTGCTTGATCATAAGGATGACTTGGTGAGTCACTATCTGTCACAGCCTCTTCATCTTCATTGTCAGAAAGCAGCTTCACTTGTGCAGTTATTTCCTTGGTCAATTGAGCCAAATTTGTGAGAAGGTTAGCAGCATTTGGAGGCACTCCAGCTCCATCAACCATCCATGGGAACTCCATAGTCTCACCATTTGCAATTTTTGAAGAAAGGATAATATTGTGCAAACGAGCCTTCGCTTCATCTATCTCAATAGAGCCATCCTGAAGTCCATCAAGCATAGAAGAGTCCTTACTGACAAGTGAAACCAGAATTGGAGTTAACTCCCCCTCCAAATCAAGAAGACCTTTCGCAAAAGCTGCTGCAGACATCTGGACACGACCTTCATCTGAACTGTATATTTTCAGATCATGCCTATATGTACTGTGCAGACGAAGCAATCCTGGTCCTTCACTTGGATACATATTATTTCTGAAGTATCTTCCCAACTCTTCTGCCTGCTTTCTCCCAGCATGAGTTAGAACTCCACCGTACTTGAGAACCATCAGTGCTTCAATTGGATACTCCTCCTTCCCGTTGCCGTTACTTTTAGGAATATGGACCCAATTGGATGGCTTTAACTGCACTTTCCTATAAATACCTGAAAAATGTCCACCCTCTTCTAGAACTGCTCTAACTTGGCGTAGCTTCTCTGCATGCTCAATTTCAGCATCACTATCACTTTCACGGCCAGACCTAGCACGTGGAACAAGGATTCTTGTTGCATCTAATAGATCTTGCAGCTGCAAGGCACTTTTAAGTTTTGCCTCTGCATGGGCCTTTCCTCCATTGTATTTCAACATTAATTTTAAAAGCTTTTCTTCAGTTACCTTCAGCTTCACCTTTTGCTTTGGCGTGCGATCCCCATGGCGTATAACAGCTATGACACAGCGCAGCTCTTCTGATTGCCTAGATATGCCAACAGTTCCCCTTTCTCGATCTCTTACAGCATCAAATGGTTGGACTGGCTCACTGACTTTCCATGGAAGATTAGCAGGAATGGTGGATGAAATATGTGGAGCTTTATCATCGAGAAACATTTTCCTCAGAATGCATGCAGCATCATCGTAGTACTTGTGTGAGCTTTTCACAAAACTCCAGCCATTGACATCACATACATAAGACCTTGCCTCCCCCAAATCACACCTTAGAAGATCAAAACCACACACCGCTTGTCCGAAGGCTTGGCAAATATTCCTTGCAATTTGTTTCTCAGTAGGGGTTAGTAAAACAGGATAGCGCACCTCTTTTCCATCAGAATTCCTCATAACAACCCCATCTACAACTGGAGATTTGCGGGCTTCAGCATGTGCATATCCTGGCCCAACTGTATAAACCTTGACATCTGTTCCTCCTGTTGGCATGAATTCTTCATAAATGTAAGATCCATCTCGCCTCACCTTCCTAATGTCTGGATAAAATTCACTAGATCGATTGCCAACCTTGCGGAACAGTTCTTTCATTCCTCCACCAGCGGAGCTAGGATAATATATCATTATGTTATGGTCATCTCCATCGATTGGTTTCTCCACAAAAGGCTTGTAAAATCGCTTTCCATGGATCTCAATAAAATCATCTTGCTCAACAAAGTACTTTAACTCTTGGTTAGGGTATTCTCTTCTGACAACAGCATAAGTTGGAACAGGAACTCCGAACAATTTAAGGTGCTAAACAGGCAAAAGGGAAGTATCAACATTTGCGAAAAGAGAATAAGCTATTATGTAAAAGGTTGCAAACTGGAGTGGAGGGTTGTGTTTCTCTATAAGTATAGTTGGATAAAACCATCTGTTGACTATCTTATCCATCCTATAAATTTTGTTGACGGTAATAGTTGCTGTGTCAGGAAAACAAAACAAGAATACTTATAGGCCAAGCATTTTGTTGGATATACATAATGATATAACAAATAAAACAAACTATACTGTTCTTGCAGACTAGGACCACATCAGTCACATAATATAAGGAACAGACATAACATCTAGTTTTTTTTACAGTACTTATCTTTCCATCCAAAATTATGCATATCCTTTTGCAGGTTCCATAGGACACATTTACACAGAGGAACATATTGTAGGCATATGAACTTAAAAGAAATTTCTTTTCAAACTGGAAATGCTATATCTAAGAAGAACATTTGCTCACAGGAGATTATCTCATTGGTATCAGTTTCCAGAGAGAGAGAGAGAGAGAGAGAGATCAGTACCAACTTCTGCATTTATTAGGATAAAAAGGCCTGTTTGTATTGGCAGTTTCAAAAGAGAATGTAACAGATATTACAGTAGAGTCTTGAGATTAACATGGTCAACAATAGACTGCAGAAGCAAAAACTAGATATTTCAAACGAACTAAACAAAGGTTCATTACCAGATATTCATAGATGATCTTGCTGCCATCTTTTGGTTTATATACTGTTGAGTACTACTACCTTCTTCAAGAGAAGTTATTTCTTCTAGTTTAAAGGAGGTTAATTTGCATCCCATGATAACTCATATACTTTGCTGCGATCATGGAGGAGGTATTGGGGATCCAACTCATTGACCAAAAATGGCCTGCGTAAAGCAGCATATTTCTCTGCCTTTTCTAGTGGATACCCAGCCGAGTAAAAGGCAATCAGACAGTCACATAGAGGCCAGCTTTCAATAGGATCTTCAAGAATGATTTTGTCACCAAAAATTATAATCTCGAACTCCCCGAACGCCCGCAGCCTCTCAAGAATCTGCTCCATGGGGGAACACCACACCTTCTTCTCCATGACGCAGACACCAATCTTGATCTTGCCTCCACCGTCACAGCCATCATTCCGCCGCTCCATCCCCTCGCTACCCCTTTCTGTTCTCCGGGAAAGAAGAGATTACAACGGGAAAGGGAGGGTCTGTTTCTTAGGACATTTCGCACCCCCCACAAGGATTCCAAGATTGAAGCTTTTTATGGAGGAGGGCAGGGAGGGACGAAGAGGGTATGTGAGGAGAGTGCACTGTGCAAGGATAAACTTTTCTTCCTTTTTCCCCCTTTATTTTTCAAGGACTACAAGTCTACAATGAGCAGCTCTCTGCGTCTCTCCCCATGCTAGTTATTCTGAATCTCTTCCCATGCTAGTTTATCTCGGATTTGCTCGGAAAGAACCTCCTTTTCATTGCTTTTACTTTTGTTT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0041300.2 | 1 | 32911514 | T | C |
| Osa01LNT0041300.2 | 1 | 32912247 | A | G |
| Osa01LNT0041300.2 | 1 | 32913109 | C | T |
| Osa01LNT0041300.2 | 1 | 32913782 | T | G |
| Osa01LNT0041300.2 | 1 | 32914664 | A | G |
| Osa01LNT0041300.2 | 1 | 32914673 | A | C |
| Osa01LNT0041300.2 | 1 | 32915196 | T | G |
| Osa01LNT0041300.2 | 1 | 32915877 | C | T |
| Osa01LNT0041300.2 | 1 | 32916660 | T | C |
| Osa01LNT0041300.2 | 1 | 32917110 | T | C |
| Osa01LNT0041300.2 | 1 | 32918542 | T | A |
| Osa01LNT0041300.2 | 1 | 32919072 | A | G |
| Osa01LNT0041300.2 | 1 | 32919297 | A | G |
| Osa01LNT0041300.2 | 1 | 32919568 | T | C |
| Osa01LNT0041300.2 | 1 | 32920024 | T | C |
| Osa01LNT0041300.2 | 1 | 32920379 | A | T |
| Osa01LNT0041300.2 | 1 | 32920935 | G | A |
| Osa01LNT0041300.2 | 1 | 32920990 | T | C |
| Osa01LNT0041300.2 | 1 | 32922316 | A | G |
| Osa01LNT0041300.2 | 1 | 32923205 | T | C |
| Osa01LNT0041300.2 | 1 | 32923945 | C | T |
| Osa01LNT0041300.2 | 1 | 32924407 | A | T |
| Osa01LNT0041300.2 | 1 | 32924762 | A | G |
| Osa01LNT0041300.2 | 1 | 32924912 | A | G |
| Osa01LNT0041300.2 | 1 | 32925067 | G | A |
| Osa01LNT0041300.2 | 1 | 32925633 | C | G |
| Osa01LNT0041300.2 | 1 | 32919992 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa01LNT0041300.2 | DTM_#DNAt_MULE_japo_Os3566 | Chr1 | - | 32906535 | 32906995 | 460 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0041300.2 | osa-miR5537 | Translation | 4.5 | 11.122 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR5543 | Cleavage | 5.0 | 13.944 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR5791 | Cleavage | 4.5 | 17.185 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR5804 | Cleavage | 4.0 | 13.929 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR5824 | Cleavage | 4.0 | 15.278 | 1 | 24 |
| Osa01LNT0041300.2 | osa-miR6246 | Translation | 5.0 | 19.885 | 1 | 23 |
| Osa01LNT0041300.2 | osa-miR6256 | Cleavage | 4.0 | 15.304 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR166e-3p | Cleavage | 5.0 | 20.639 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167a-5p | Cleavage | 4.0 | 13.909 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167a-5p | Translation | 5.0 | 13.883 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167b | Cleavage | 4.0 | 13.909 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167b | Translation | 5.0 | 13.883 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167c-5p | Cleavage | 4.0 | 13.909 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167c-5p | Translation | 5.0 | 13.883 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR395t | Cleavage | 4.0 | 17.765 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR395c | Cleavage | 4.0 | 17.765 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR396c-3p | Cleavage | 5.0 | 14.489 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167d-5p | Cleavage | 4.0 | 13.909 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167d-5p | Translation | 5.0 | 13.883 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167e-5p | Cleavage | 4.0 | 13.909 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167e-5p | Translation | 5.0 | 13.883 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167f | Cleavage | 4.0 | 13.909 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167f | Translation | 5.0 | 13.883 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167g | Cleavage | 4.0 | 13.909 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167g | Translation | 5.0 | 13.883 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167h-5p | Cleavage | 4.0 | 13.909 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167h-5p | Translation | 5.0 | 13.883 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167i-5p | Cleavage | 4.0 | 13.909 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167i-5p | Translation | 5.0 | 13.883 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR166i-5p | Translation | 5.0 | 18.35 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167j | Cleavage | 4.0 | 13.909 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR167j | Translation | 5.0 | 13.883 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR437 | Cleavage | 5.0 | 14.943 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR437 | Translation | 4.5 | 12.926 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR528-5p | Translation | 3.5 | 17.813 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR810a | Translation | 4.5 | 12.731 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR818a | Cleavage | 5.0 | 13.33 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR818b | Cleavage | 5.0 | 13.33 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR818c | Cleavage | 5.0 | 13.33 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR818d | Cleavage | 5.0 | 13.33 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR818e | Cleavage | 5.0 | 13.33 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR1425-3p | Cleavage | 5.0 | 8.543 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR1854-5p | Cleavage | 5.0 | 15.702 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR1869 | Translation | 5.0 | 13.549 | 1 | 24 |
| Osa01LNT0041300.2 | osa-miR2101-3p | Cleavage | 4.5 | 13.238 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR2104 | Cleavage | 4.0 | 7.471 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR2118e | Cleavage | 5.0 | 23.114 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR2118r | Cleavage | 5.0 | 23.114 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR3979-5p | Translation | 3.5 | 14.503 | 1 | 20 |
| Osa01LNT0041300.2 | osa-miR5149 | Cleavage | 4.5 | 12.249 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR5149 | Translation | 4.5 | 9.253 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR5152-5p | Cleavage | 3.5 | 16.75 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR5160 | Translation | 4.0 | 15.525 | 1 | 22 |
| Osa01LNT0041300.2 | osa-miR5491 | Cleavage | 5.0 | 17.427 | 1 | 21 |
| Osa01LNT0041300.2 | osa-miR5499 | Translation | 4.0 | 9.979 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0041300.2 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0041300.2 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Osa01LNT0041300.2 | 1 | qLRC-1 | Resistance or Tolerance | Drought tolerance | RM237 | RM302 |
| Osa01LNT0041300.2 | 1 | gpy1 | Others | Others | RG541 | RG101 |
| Osa01LNT0041300.2 | 1 | qCC-1 | Physiological trait | Source activity | RG541 | RG101 |
| Osa01LNT0041300.2 | 1 | An10 | Morphological trait | Panicle/flower | nan | nan |
| Osa01LNT0041300.2 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)