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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0440700.1

GTCCATCTACAAGCACATACTCACACCAATTCCAATCTAATCTATCTTATAACTTAACTAATTAAAAGATTCATATTTTTCCAATCGTTGGTGCGCACCAGCAACCCCCGCCCCCGAATCCCAATCGCGAGCGAAAAAAAAGAAAGTTCGATTCAATCAATGGCGCGGACAAAAAAAACCCGTAAAAAAGGACGATAAAAAAAATCCTCTTCATTTGTCAGCCACATCACGCGTGCCCCCTCTCCAAATCCCAAACCACCATAATCCAAACCAAAAACAAAATACTAATCCAAATCGGAATCATCACAAAATCATCTGAAATCTAAAATACCGAAAATTGGAACCATGCTATTATAATTTTGTAAAATTTAAGATATGCCATTAGGACTCATGTGGGTCCTTCAATGACGTGGGTCCTACATGTCATTGAGATATCGATGACATATCTTAAACTTTGCAAAATTATAATGGCATGGGTCTAAATTACCAAAAAAATAGATCATAGGAAATCAACAAATTATAGTACAAAACAAATCACACAGGAGAGGGAGGGCGAGCGCTGCTCCTTGCCGGACCTCCACGCCGCCTTGCTACCGGGAGCCGTCGACCGGCTGCTGCTCCAGGGATCCGCCGAGCCGCCACTGGGCCGCCGCCGCCGTTTCCCCTCCTTCTAGCTGGGTGGAAGGATCGAGATGCGCCCTCGCTCTGGGAGCCGTGCGCCGTTCTCTCACTCCGCTCAGGTCCACCGCTCGGGAAAGCCACCAACATCGTCGTCGCCACCAGATCCGTCCACGAGGCGCCATCGGTGAAGCCGGATCGGCGATTTCTACGTTGCCGTTGGATCCGCCGCAGGAAGCCGTCGGCACTGGATCTGCCCGAGGGAAACCACCGACGCCGTCGGATCTTGAGGGTGGAGAGGGTGCCGTCCCTAAGAGGAAGGGACGGCCATCGAGGCCGACGGGGAGAG

Coding Potentia
Explanation CPC Score
noncoding -1.15533
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0440700.1 9 16884002 T C
Osa09LNT0440700.1 9 16884107 T C
Osa09LNT0440700.1 9 16884200 G T
Osa09LNT0440700.1 9 16884429 A G
Osa09LNT0440700.1 9 16884434 T C
Osa09LNT0440700.1 9 16884441 C T
Osa09LNT0440700.1 9 16884445 T C
Osa09LNT0440700.1 9 16884464 T C
Osa09LNT0440700.1 9 16884515 C G
Osa09LNT0440700.1 9 16884757 A T
Osa09LNT0440700.1 9 16884933 A G
Osa09LNT0440700.1 9 16885052 T C
Osa09LNT0440700.1 9 16885187 T C
Osa09LNT0440700.1 9 16885324 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0440700.1 osa-miR5079b Translation 4.5 5.018 1 22
Osa09LNT0440700.1 osa-miR5079a Translation 4.5 5.018 1 22
Osa09LNT0440700.1 osa-miR5153 Translation 5.0 23.411 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0440700.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0440700.1 9 nan Morphological trait Panicle/flower RM257 RM566
Osa09LNT0440700.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus