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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0440800.1

ACAGGAGCAAGTGAACTCTGCATTTCCGAATAGAATGTAATGTCAATACAGTGCAAAAGGGATGCACAGGATCAATTCATCACACGACACAAAGGGGGGACTACAATGAGATAGTATCAACAAAAGCCTTCAACGCCATTCCACATTCCACCCACAATTTGACCAGGTTTCTTGAATTCATGGCAGCATAGGATAGGATCTGTTTCTTCTGAAGATGGTGACAAATATTCCCTCAAGAACAGAAAACTAAAAAAGCTATATCTTTCTGTGTCAGGTCACACATGATGGATCAGCATGGCTCAAATCACTGACCCCATTGCGAGAACAGCATAAGATATTCTCACATTTCAGTGAGGTTGAGATCATGGATCAGCCAAGTTCATTTCATTGATTTGCATAGCTCCATGAGGACCTTCGTGCCAAACAGATGCCATCAACTCCTCAAACTGCAACATAACATACAAAACCCTCCGCACCATTGGTGAACTCGTTGCACAGATCATATCTTGCAGTGAACTCCGGAATAAAAGTCGCCTCCATCTGTAAGTATGTACAGGGTCCACAGAATGAGGCTTCACTGAAGGATGCTTCTTTCTTACATGCTTGCAGAGCTCTCCATAACTACCCATGTATGAGCAACCATCTTGCATACAGCTCCTCTTGTTTTGGTTCAACTGTTCCCGAGCAGGTTCAACCAATGTATATCCCTTAACCTCACCACGGCAAAGGGGGCATGTAAGCTCTATGGAGTCTAGGTCCTCACAATCTTTTGAGCTTCTCCGCGAATCTATGAGTTGATCAAGACAGTTTGAATGGTGGTAATTGGTTGCACATATATATGGACGACAACCTTTATCATGAGACGAACAAAGTAGAAGGACAGCATTATGTGGGCATTCCAAGCAAACTGGACAGATTGAATCTTTCCACGCACATTTCTCTGTTGCTGCCAATTCCTTGTTAGCAACTCTCTTGAAATTGCATTGGCTGAAGAGCCTCCGATTATGTGATCTGAGCTGACGAGATGAACATTTCTTGCCCCTTATACTTTTAGTCATCTTGGTAATAGATTTGTATCCATTAGCCGACTCTACTTCAGATAATTTCCTTGTTCACTCTCCTTATCTCACCGCGGGGCCCCGTTTCCCCCCGAGGTAGGGAGGAGACGGGGGAGGGGAGGCTGCACCGCCTGCACGGGCGGCCGGAGGAGGGCGAAGCGGCGGAGACGAGAGGTTGGTTGCTGGG

Coding Potentia
Explanation CPC Score
noncoding -1.24811
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0440800.1 9 16946239 T C
Osa09LNT0440800.1 9 16945994 T C
Osa09LNT0440800.1 9 16946969 T C
Osa09LNT0440800.1 9 16946367 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0440800.1 osa-miR1437b-5p Cleavage 5.0 16.174 1 21
Osa09LNT0440800.1 osa-miR528-3p Translation 4.0 15.254 1 21
Osa09LNT0440800.1 osa-miR5159 Translation 5.0 12.025 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0440800.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0440800.1 9 nan Morphological trait Panicle/flower RM257 RM566
Osa09LNT0440800.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus