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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0441500.1

ACAAAGCTCTATCTTATTTTTGCAATTACACGATAAATGATACAACACAATAATTTGCCAAATGTGGCAAGATCGTACATGTTTTTGGTATGAATATGAGTTTGCAGCTTATTGAATTAATATGATGCTTCTAAGCAGAAAATAATACAGGGATATTTGGACAAAATTCACTTTGTCCCCGGCAGTTTGACAAACTTTCACTTTGCTGCCATAATGTTCATTTCTGTTGCACTTCACTCCATTGTGGTTTCGCTCAACTGCAGCCTAGTCACTGTATCAAATAACTGTTAAAGTGCCACATGTACCTCTGTGAAGCTGATAACATACAACATGACCAAGTATGGCCGTCAAGTGTTATGTTAATCAATGGTACCAACAACACCGTAACAGTGACTTGATACTGGGACTCGTTCTTGCAGAATGTCAATACCACAATGGAGCAAAGTGCAATGAAAATGGACAGCACAGTGGCAAAGCAAAACCATGCTAAACTGCAGGGGGCAGAGTGAAATTTACCCAGGTAAGCAATGCCTCTTGATCAAGACCAGGTAGTCCTATTCTTTATGGCATACTTGCTTCCACCTTCCAACCCTTGGCGGTATACTAATTTCCACTTCTCGAATGTGCAATCAATAAAATTGTAATAGCCCCCATGAAGGCTCAAAGTTCCTTCATTCACCCTTTTCTCTATCCAAGGGTATGTTAACAAGTTCAACAGTGAGCTATTAATTGATTCCTTTTCACAATGTTTGCACTGTAATTCAAAATTCAAATTTCCAGCTGCTGCTTCCGTACTTAACCTTGCACTCTTTGCAATTGACACCCAATCTCTGATAAAGCTTCTAGATTGCGAATCATCTTGCTTACTTTTCATACTCATTAGTGCTTGGATACCACCACAACGGCTGTGACCTACCACTAATACATTCTCTACCTCTAGTGTGTTGACAGCGAACTCCAGTGCAGCGCTAGTCTCTGAAGCACCATGCTGATATGGTGGTACCAAATTTGCTATATTACGGACAGTAAATGCTTCCCCGGGCTGAAACCCCAAAACACTTGAAGGACATACCCTAGAATCAGCACAAGCAACCACCATGAACTTTGGTGTTTGCTGCTGAGCAAGATTTTGATAGTTAGAAATATTATCCACACAATTCCTGTGCTTGAAGTCCATGAACCTTGCTTTCAACTCCATGAATGGATCATGTTCCCCATCTATCTCATCTACTGTACCATGTTGAAAATCTAAAAGCTGTCGAGTCAAACCAGAATGATCTCTTGAGGCCATTGTGGTACACGGAAAGTCCCTCCGATGGATTGGACGACGAGACGGCGGCTGCTCGCCGGCGGCAGGGACGCCGTCGTCGTGTCCGGTGGCGCGCCGCAAGTGCTGGAGCGCTGCGTCTTCA

Coding Potentia
Explanation CPC Score
noncoding -1.28287
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0441500.1 9 17567766 A G
Osa09LNT0441500.1 9 17567921 C T
Osa09LNT0441500.1 9 17569725 A G
Osa09LNT0441500.1 9 17570281 A G
Osa09LNT0441500.1 9 17569877 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0441500.1 osa-miR5526 Translation 4.5 18.708 1 21
Osa09LNT0441500.1 osa-miR5536 Translation 5.0 9.661 1 22
Osa09LNT0441500.1 osa-miR5832 Cleavage 5.0 13.282 1 21
Osa09LNT0441500.1 osa-miR417 Cleavage 4.5 19.691 1 21
Osa09LNT0441500.1 osa-miR1875 Cleavage 0.0 11.845 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0441500.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0441500.1 9 nan Morphological trait Panicle/flower RM257 RM566
Osa09LNT0441500.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa09LNT0441500.1 osa-MIR1875 100.0 252 1 252 1.04e-131 466
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus