\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa09LNT0441600.1

CTTTTCACAATGTTTGCACTGTAATTCAAAATTCAAATTTCCAGCTGCTGCTTCCGTACTTAACCTTGCACTCTTTGCAATTGACACCCAATCTCTGATAAAGCTTCTGTTCAAGAAACAAACACCATATATGCATGATGTAAAAGAAAAATAAAAGGATACGTAATGCAAAAGATGGGAAGAACTTTACCTAGATTGCGAATCATCTTGCTTACTTTTCATACTCATTAGTGCTTGGATACCACCACAACGGCTGTGACCTACCACTAATACATTCTCTACCTCTAGTGTGTTGACAGCGAACTCCAGTGCAGCGCTAGTCTCTGAAGCACCATGCTGGCATAATAGCATTGTTTACTGTCAAAACTTGCATGGTAAAACTTATATTGGAAATAATAATTCATTTGTCTAAACTTGAACTACCTGATATGGTGGTACCAAATTTGCTATATTACGGACAGTAAATGCTTCCCCGGGCTGAAACCCCAAAACACTTGAAGGACATACCCTAGAATCAGCACAAGCAACCACCATGAACTGCACACCAGAAAAAGGAAATGAGCAATCCCAAAGAACTCAGTAATGTTAATATTAAAGAAATTTGCAACAGCACCATAGTCATTCACCTTTGGTGTTTGCTGCTGAGCAAGATTTTGATAGTTAGAAATATTATCCCTATAAGTCACAAACACAACAAACTCAGTAAACAAAAAAAGTTAGATAGATTACAATGATGCATGATCCACTTACACACAATTCCTGTGCTTGAAGTCCATGAACCTTGCTTTCAACTCCATGAATGGATCATGTTCCCCATCTATCTCATCTACTGTACCATGTTGAAAATCTAAAAGCTGTCGAGTCAAACCAGAATGATCTCTTGAGGCCATTGTGGTACACGGAAAGTCCCTCCTGCAGATGAGAAATTCATCTTACTGGTACAAATTACAATACAGCAACAGAGTATTCATTATTTTGTTCTTCAGACAAATTAAATTAAATAAGGGGACATTACAAAGTTCTTTTTTTTCGAATAAGAGGGCAGGAGGACTGCCTCTTTTTCATTAATAAAGGAGGAGATAAATGATTTATTTACAGGACTAAAAAGTTCTGAAGGCACAAAGATCCAATTAGAAGAGTTTACATGCTCAAACCCATCCTAAGTATCACAAATGCATGGTAAAATTGGAAGGATACCCCACTGCAAAATTATGCCTTATTTTACCCAGTTCATCTGAGATATATAATTCCCGAACTAGAATCTCCTTTCCTCAACCACAACATCACATCCACCCCGGAAGCTGGAATAGCAGAGCCATCAACATTGAGCCACGGGCACAGAGAAAGCGGCTATATAAATTAACAAAAAAACATCAAGCAAGCACGCTGGCCAAACAAAACGGCCTAGCAGATCCACCCAATTAGTTCAGACAATTCTTCAAACATCTAACTTGCGCACTAGATCAGAGATTCGCGGGAGACCGCTGGTGGTTCATGAATAGGAAAAGGGACCAAAAACCGATCAAATAAGACGGATAGTTCCATGATCCAATCAGTCGTCCCAAAAGGCCGTAAAAATTATGGGTTGGATCGATCCTGGGCTTACCGGCTAGATCCTCCCACACGCAGGGAAACGCTGAGCGGCCTCGAACCACCGATCTGACGCACCCCCACAGAAGCCACGAATCAACAAAACGAATCACGAAAAGCCGCAGAGCCAAGAAAATGGGCGGGCGGGTCGGCGAGCTCACCGTCACAGCGGAGCGGCTCCGGCCGGGGCCGTCGGCGGTGGGGGGCGCGAGGTTGAGGCACGGGGAGGCGGGGCGGAGCAGACTAGGAGCCATGTGAGGATGTCCCGGTGCTCGCGCGGGTGGTGGTCGTCGTGGTCGGGGTCTCGGGCATTTGTGGGAGGGAAAAGCTTCGCGCGGCAACGGCCGGGGGGGATTTTACGGGGTAGAGCGAGGCAGCGAGCACGACGGCGATGCGACGGAGAAACCGAGGTCGAGGCAGCGATTTTCTTTTTTAGAAAAATGATAAATTAAGCTGGTGGGGGGCGGAAACTTCGATGATTAACTGGAAGCGGCCGCGTAAAGGTTCACGTGGGGGAAACATCTCGTCCGTCCGTTTGGGATGCGGTGGGA

Coding Potentia
Explanation CPC Score
noncoding -1.25889
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0441600.1 9 17569877 A T
Osa09LNT0441600.1 9 17569725 A G
Osa09LNT0441600.1 9 17570281 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0441600.1 osa-miR5832 Cleavage 5.0 13.38 1 21
Osa09LNT0441600.1 osa-miR7693-5p Cleavage 4.5 12.783 1 24
Osa09LNT0441600.1 osa-miR417 Cleavage 4.5 20.074 1 21
Osa09LNT0441600.1 osa-miR395w Cleavage 5.0 7.919 1 22
Osa09LNT0441600.1 osa-miR395w Cleavage 4.5 14.975 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0441600.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0441600.1 9 nan Morphological trait Panicle/flower RM257 RM566
Osa09LNT0441600.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus