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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0441700.1

CCTTTGTACTCTAGTGGGTGACATTTTATCCTTTGCAATTTTCTGGAGTGGCATATTTTCCGTTTTCTGGGTAAGTTGAATGGCAACGCGCAACGCAGCAACAAGCCAACAACCAGCCAAATGCGAGAAGCGCGGCGCGATCTCCCTCCCAAACTCCGGCCGCCGTCTCCGCCTCCAGAGACTCAAGCAGCGCCGCGGCGCCGCCTCGCGGGATCTCGTGTTGGACCGGATCCTTCAACCGAGGATCCCAACCGGCAACCGCAACCGCTCCGGGGGCGCAGTCTGACCGGCCAAGCATCAATTCAGGTTGACAACCTGATGTAATATTAATACATGGTCCAAAAATACCATCAATGGCGTCCTTCAGCCGCCTGTTGATAGCCTGCGAGGGCCGAGGATACGCCATTGCAGATTCAGCACTTCCAGCTGCACTCAATTATAAGTCAATTATAATCAGTAATAAACTACTTCCTCCATCTACTTTTGATAGTCATATTTTATCTTGACACAGACTAAGAATAATTAATTCTACTTATCATCTATTTAAACATGCTACTAATCATTCATCGTAAACAAGCGATTCATTAATATTTACATTTCTCAAAGCCCATGTACCCAATCATATGTGGAAGAATGGAGAGTCACGCATTAAATTCGAGAAAATCATTAAGATGATAGTTTGTTGGATTGAAATATGCCTATCAAAAATAAAATTTTCAGATTTAGAAATATGACTATCAAAAGTAGACGGAGTACTATTTTTTTCTTCTTCTGAAGACTGCAATCCATCATCACTTCACTGTTATGTGTCGCAAATGCAATTGATCACAACTGATCAGATCACTTTGAAAGACAACTACCATACGCAATTGATCAGTTGCCTTGTAGAAATCC

Coding Potentia
Explanation CPC Score
noncoding -1.16492
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0441700.1 9 17638221 A T
Osa09LNT0441700.1 9 17638081 C T
Osa09LNT0441700.1 9 17638475 G T
Osa09LNT0441700.1 9 17640338 G A
Osa09LNT0441700.1 9 17640883 G T
Osa09LNT0441700.1 9 17641924 T C
Osa09LNT0441700.1 9 17642025 A G
Osa09LNT0441700.1 9 17642343 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0441700.1 osa-miR1857-5p Cleavage 3.5 15.406 1 21
Osa09LNT0441700.1 osa-miR3979-3p Cleavage 3.5 16.444 1 20
Osa09LNT0441700.1 osa-miR5157a-3p Cleavage 4.5 8.806 1 24
Osa09LNT0441700.1 osa-miR5157b-3p Cleavage 4.5 8.806 1 24
Osa09LNT0441700.1 osa-miR5488 Cleavage 5.0 13.524 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0441700.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0441700.1 9 nan Morphological trait Panicle/flower RM257 RM566
Osa09LNT0441700.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus